Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1381 ATGGATTTCTCAAAGAAGCGCAAAACCGAGGAGAACGGGACCGACGATTCTGTGCCCTCAACAACCCCCCTTGGCGCGGATGACATCCGCAAGATCCTCCGACCCTTCACGCAAGAACAGCTTATCGACCTGCTTCAATCCGCTGCTCTTAATCACCCTGACGTTCTCGAGTCTATACGTTCCGTCGCCGACCGTGACTCCACCCTTCGGAAGCTCTTTGTTCGGGGCCTTGCAGGGGAAACCACCACAGAGACACTCAGCAGTGTTTTCTCCTCCTATGGAGTGCTCGACGAGGCAATCGTTATTTTCGACAAAAATACCGGGAAGTCCAAAGGATACGGCTTTGTGACGTTTAAGCACGTTGATGGTGCTATACTGGCTTTGAAAGAGCCCAGCAAGAAAATTGACGGGAGAATGACGGTGACCCAGCTTGCAGCTTCTGGATTATCGGCCATTCAAGGGACTAATGCGGCTGCCGCAGCCACAAGTGATGTTTCTACCCGAAAAATTTTTGTAGGTAATGTTCCGTTTGATATATCGTCGGAGAGCCTGTTGAATTACTTTTCAGCATATGGGGAAATCGAAGAAGGGCCTCTTGGGTTCGACAAAGGTAATGGAAAGTCCAAAGGTTTCGCATTCTTTGTGTACAAAACGGAGGAGGGTGCTAGAGCGTCTCTAGTTGAGCCAGTCAAAACTATTGATGGGCATCAAGTGCTTTGTAAATTGGCCATGGATAACAAGAAGGGAAAATCTGGGGCTACTAATCAGGGCCCTCCTGGGTTACCAGGTAATGGCATGGCAGCACAACAACCGCAACAATCTTTACCTGGCCCGATGATGGGATCAAATTATGGCGGTCATGGCTCTTCATATGGGGGATTTGGTGGTGCGCATCAGGGCCCCATGACAGTGCCTGGTAATAATTATGGGTTGCAGTCTTCATTGCCGCCATATGGCACTCAGGTTCAATCTACGTTAGCTCCCAACAGCGGTGGGGGGTATGGTCCTGGAATTGGAGGGGCTTATGGTGGCTCTCAGTTCAGTGGGCCAGCTTCCGGTGATTATGGCGCTAGGGTGCCTCCAACTTCTGCTGGAATGCCTTCCGGAGGATATCCAGACGGTTCGCATTATAATTTGCCCTCATCTGCTGTTCCCTCGCAGCATCAACAGCCCATGCAAATGCCAAGGATGGCTCCCGGTGGAATGTACCAAGGCATGCCGCCCTACTACTGA 1233 0.5101 MDFSKKRKTEENGTDDSVPSTTPLGADDIRKILRPFTQEQLIDLLQSAALNHPDVLESIRSVADRDSTLRKLFVRGLAGETTTETLSSVFSSYGVLDEAIVIFDKNTGKSKGYGFVTFKHVDGAILALKEPSKKIDGRMTVTQLAASGLSAIQGTNAAAAATSDVSTRKIFVGNVPFDISSESLLNYFSAYGEIEEGPLGFDKGNGKSKGFAFFVYKTEEGARASLVEPVKTIDGHQVLCKLAMDNKKGKSGATNQGPPGLPGNGMAAQQPQQSLPGPMMGSNYGGHGSSYGGFGGAHQGPMTVPGNNYGLQSSLPPYGTQVQSTLAPNSGGGYGPGIGGAYGGSQFSGPASGDYGARVPPTSAGMPSGGYPDGSHYNLPSSAVPSQHQQPMQMPRMAPGGMYQGMPPYY 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1381 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 168 256 IPR000504 GO:0003723
Alju03g1381 410 PANTHER GEO13361P1-RELATED 53 301 - -
Alju03g1381 410 MobiDBLite consensus disorder prediction 305 330 - -
Alju03g1381 410 MobiDBLite consensus disorder prediction 247 276 - -
Alju03g1381 410 MobiDBLite consensus disorder prediction 352 376 - -
Alju03g1381 410 Gene3D - 61 149 IPR012677 -
Alju03g1381 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 147 IPR000504 GO:0003723
Alju03g1381 410 SMART rrm1_1 169 241 IPR000504 GO:0003723
Alju03g1381 410 SMART rrm1_1 71 143 IPR000504 GO:0003723
Alju03g1381 410 Gene3D - 151 299 IPR012677 -
Alju03g1381 410 MobiDBLite consensus disorder prediction 1 24 - -
Alju03g1381 410 MobiDBLite consensus disorder prediction 291 331 - -
Alju03g1381 410 SUPERFAMILY RNA-binding domain, RBD 60 145 IPR035979 GO:0003676
Alju03g1381 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 170 236 IPR000504 GO:0003723
Alju03g1381 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 138 IPR000504 GO:0003723
Alju03g1381 410 SUPERFAMILY RNA-binding domain, RBD 161 260 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1381 Alju-ChrAlju03 42315517 42316749 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1381 160 375 C2H2 Transcription Factor Family AT2G19380 30.263 2.59e-16 79.0