Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1346 ATGGTTTTGGCCTCCCAGACAGATCTTCCTTTCAACGAGAACGACTCACAAGACATGGTCATATACCAAGTCCTCCACGAGGCCAATTCTCTTCACACCACCACCTCCTCCTCCGCCGCCACCGCCAACGCCGCCGCATTCATCCCGCAGAGGCAACAGGCCGCCGTACAGAGCGGGCTAGAGCCGACCAGGACCGTCAGAAAGAAGCATTACAGAGGCGTGAGGCGGCGGCCATGGGGGAAGTACGCCGCGGAGATCCGAGACTCAACCCGGCACGGAGCACGAGTGTGGCTGGGCACGTTCGAAACCGCGGAGGAGGCCGCCATGGCTTACGACCGAGCGGCTTTTAGAATGAGAGGCTCTAAGGCCTTGCTCAATTTTCCCGCCGAAATCGTAGCTTCTTCCATGGAAATGTCTTTTGACTCTAATCAACCTAATAATAATTTGAGCTCCTCAGGAAGATTTTATAGTCAAGATTCAGATTCAAGTGCTAGCAGCAGCTCCGGCGTTAATTCCATAGGAACAAACAGAACCTTGTTAGAAACCACAAGTAGCACAGACAGTTAG 567 0.5362 MVLASQTDLPFNENDSQDMVIYQVLHEANSLHTTTSSSAATANAAAFIPQRQQAAVQSGLEPTRTVRKKHYRGVRRRPWGKYAAEIRDSTRHGARVWLGTFETAEEAAMAYDRAAFRMRGSKALLNFPAEIVASSMEMSFDSNQPNNNLSSSGRFYSQDSDSSASSSSGVNSIGTNRTLLETTSSTDS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1346 188 SUPERFAMILY DNA-binding domain 70 130 IPR016177 GO:0003677
Alju03g1346 188 CDD AP2 69 129 IPR001471 GO:0003700|GO:0006355
Alju03g1346 188 Pfam AP2 domain 70 120 IPR001471 GO:0003700|GO:0006355
Alju03g1346 188 MobiDBLite consensus disorder prediction 140 188 - -
Alju03g1346 188 Gene3D AP2/ERF domain 69 130 IPR036955 GO:0003700|GO:0006355
Alju03g1346 188 SMART rav1_2 70 134 IPR001471 GO:0003700|GO:0006355
Alju03g1346 188 PANTHER DNA-BINDING DOMAIN 18 163 IPR044808 GO:0003700|GO:0009873
Alju03g1346 188 FunFam Ethylene-responsive transcription factor 2 69 130 - -
Alju03g1346 188 ProSiteProfiles AP2/ERF domain profile. 70 128 IPR001471 GO:0003700|GO:0006355
Alju03g1346 188 PRINTS Ethylene responsive element binding protein signature 94 110 IPR001471 GO:0003700|GO:0006355
Alju03g1346 188 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1346 Alju-ChrAlju03 42031708 42032274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1346 9 131 AP2-EREBP Transcription Factor Family AT5G47220 54.545 7.90e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju03g1346 AP2 6.8e-16 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g1346 03 42031708 42032274 Alju03g1346 03 42031708 42032274 ECH