Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1330 ATGGGTTTGATCGATCTCAACACTACTGAGGACGGCGAAACGCCGTCGTCTGGTTCCTCTGCTTCATTGTCTTCTCAATCTGGTATCAGCATTTCCGCCTCCTCTTCTCCTTCTCCTTCCTCCGTGTGCTTGGAGCTATGGCACGCTTGTGCGGGTCCAATGATCTCGTTGCCGAAAAAAGGTAGCATCGTCGTTTACTTCCCACAGGGTCACCTTGAGCAGCAAGCTCAGGATTTTCGGGTATCTGCTTACAATATTCCTCCCCATGTTTTCTGTCGCGTGGCAGATGTCAAGCTCCATGCGGAGGAAGGTATAGATGAGGTGTACTGTCAGGTGTCGCTGGTTCCTGAAAGTGAGCAAGCTGAAAGGAGATATCGCGAAGGTGAAATCGATGCCGACTATGAAGATGAGGATGCTGCAGCTGCAGTGAAGTCTACAACACCACATATGTTCTGCAAGACCCTGACAGCTTCTGATACTAGCACTCATGGTGGATTCTCTGTGCCTAGGCGAGCAGCTGAAGATTGCTTCCCTCCGCTGGATTACAATCAACAGCGTCCTTCGCAAGAGCTTGTGGCGAAGGATCTGCATGGCCTGGAGTGGAAGTTCAGGCATATTTACAGGGGGCAGCCTCGCAGGCATTTGCTAACAACTGGTTGGAGTGCATTTGTAAACAAGAAAAAGCTTGTATCTGGAGATGCTGTGTTATTTCTGAGGGGTGAGGATGGAGTTCTGAGATTAGGCATTCGCAGGGCATCTCAGCTGAAATGTGGTGGTAACTTTTCAGTTCCTTCGGGCCTGCATCTTAATCCCAGCAGTTTCATAGATGTGGTGAAGGCAATATCTACAAGATGTTCCTTTAGCGTTTGTTATAATCCCAGGGTTAGCTCATCGGAGTTCATAATTCCACTCAACAAATTTTTGAAGAGCCTTGATCGATTTTATTCAGTTGGAATGAGGTTCAGGATGCGTTTTGAATCTGAAGATGCTGCAGAACGAAGATGCACGGGATTAGTTATTGGAATTAGCGATGCAGATCCTGTTAGATGGCCCGGGTCTAAATGGAGATGCCTTATGGTAAGGTGGGAAGACATGGAAGCCACTAGGCATAACAGGGTTTCCCCATGGGAAATTGAGCCATCTGGTTCTGCTTCCACTCCCAACAACTTCAATCCAGCTGGTTTAAAGAGGACCAGGATTGGTTTGCCTTCTTCAAAGCAAGAATTTCCAGTTCCAAATGGGATTGGAACATCGGACTTTGGGGAACCATTGAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATATTCCTTTTGATGGTGTTAGTGCTCAGAGTCACCCCTTTTCTGAAATAAGGAGACGCTATCCTGGTTCAACTGTGTCTGGGATTGTCCCTTCAGGAAATAATTTCAGAATTTCACAAATGCATTCTGATGTTTCGTGCAACGGCATGGGCTTCGGTGAATCTTTCCGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCAAGCCATCCATATGGAAGAGCTTTTTCTGGTAACGATGTTCATGGAAATGGTCGCTTTGGAATTTTCGACAGCTGTCAAATGCCGGGTTCCCGAAATGGATGGACCGCCCAGGCACAGGATAATTGTGCCAATTTGCATCCTTCTGTTCCATCCGGGCAAGTGTCATCTCCATCATCTGTTTTCATGTTTCAGCAAGCAGTAAATCCTACTCCCAACTGTGACTACTATAACAACAGCATAACAAATCAGAGGATGGAGAGTAAAATGCAACATCGAGGACCACATGCTTCTCAATTCAAAGGTGGAAAATCTGCATCAGTCTCCTCTTATGAGCCTGATTTCTGTGGGCAAACTAAAGTGAGAACTAAATCCATTGGCATGTTTGAGCCTGATCAAATGGATACTTCACCATCTCACGATTCTGTGTCTCTGCGGGGAGATGGTCAAGAGCTGATTTCCTCCTATAAAAGTAGCTGCAGGCTTTTTGGTTTTTCACTGACTCAGGAAAATCACATTGCAAATTGCAAATGA 2052 0.4605 MGLIDLNTTEDGETPSSGSSASLSSQSGISISASSSPSPSSVCLELWHACAGPMISLPKKGSIVVYFPQGHLEQQAQDFRVSAYNIPPHVFCRVADVKLHAEEGIDEVYCQVSLVPESEQAERRYREGEIDADYEDEDAAAAVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAKDLHGLEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGVLRLGIRRASQLKCGGNFSVPSGLHLNPSSFIDVVKAISTRCSFSVCYNPRVSSSEFIIPLNKFLKSLDRFYSVGMRFRMRFESEDAAERRCTGLVIGISDADPVRWPGSKWRCLMVRWEDMEATRHNRVSPWEIEPSGSASTPNNFNPAGLKRTRIGLPSSKQEFPVPNGIGTSDFGEPLRFQKVLQGQEILGVNIPFDGVSAQSHPFSEIRRRYPGSTVSGIVPSGNNFRISQMHSDVSCNGMGFGESFRFQKVLQGQEILPSHPYGRAFSGNDVHGNGRFGIFDSCQMPGSRNGWTAQAQDNCANLHPSVPSGQVSSPSSVFMFQQAVNPTPNCDYYNNSITNQRMESKMQHRGPHASQFKGGKSASVSSYEPDFCGQTKVRTKSIGMFEPDQMDTSPSHDSVSLRGDGQELISSYKSSCRLFGFSLTQENHIANCK 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1330 683 Gene3D - 149 252 IPR015300 -
Alju03g1330 683 Gene3D - 315 387 - -
Alju03g1330 683 FunFam Auxin response factor 149 253 - -
Alju03g1330 683 SUPERFAMILY DNA-binding pseudobarrel domain 144 255 IPR015300 -
Alju03g1330 683 MobiDBLite consensus disorder prediction 1 32 - -
Alju03g1330 683 SMART B3_2 151 253 IPR003340 GO:0003677
Alju03g1330 683 FunFam Auxin response factor 314 385 - -
Alju03g1330 683 MobiDBLite consensus disorder prediction 9 32 - -
Alju03g1330 683 Pfam B3 DNA binding domain 151 252 IPR003340 GO:0003677
Alju03g1330 683 CDD B3_DNA 149 251 IPR003340 GO:0003677
Alju03g1330 683 ProSiteProfiles B3 DNA-binding domain profile. 151 253 IPR003340 GO:0003677
Alju03g1330 683 Pfam Auxin response factor 278 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Alju03g1330 683 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 41 678 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1330 Alju-ChrAlju03 41876810 41881363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1330 38 516 B3 DNA Binding Superfamily AT5G60450 49.800 7.38e-143 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Alju03g1330 B3 7.1e-22 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g1330 03 41876810 41881363 Alju03g1330 03 41876810 41881363 ECH