Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1297 ATGGCCCCCCGGGAGAAGTCCGCCGCTGTCAAATCTAACGCTCACGGCGATCTCAAGGAGGTGCATTTCAGGGGGGTGAGGAAGAGGCCCTGGGGAAGATACGCCGCTGAGATTAGAGATCCCGGCAAAAAGAGCCGTGTGTGGCTTGGCACTTTTGATACCGCCGAGGAGGCTGCGCGTGCCTACGACGCTGCCGCACGGGACTTCCGTGGGGCCAAGGCCAAAACCAACTTCCCTTTCCCTTCCGACAATGTTAACCACCACACTAGTCCGGCTCAGAGCAGTACGATCGACTCTTCCAGCCGTGACCGTGAGCCGGCTCGTAAGACAGATTCCTCCTCGTTCGACCTCAACTTGTCCTCCCACGCCGGGGGATCCGTCACCAGCTCCGTCCGCTTCCCTTTCCAGCAGCAGTTCCCGTTGCCGGCTGCCGTGTTTCCCGGCACGCTTCCGCAGGTGAATCGGGCGTTCTACTTGGACGCGGTCCTCCGCGCGAGCTTGGCGGCGGGTCAGGCCTTCCATGGAATCGTGTTCGATCAGCGCCGTTCCCCGGCGGGTGAGTATCGCTCCGGCGGAGTGCAGAGCGATTCCGATTCCTCCACGGTCATCGATCTAAACGTCCGCGATGACGAGAAGACTCCTCGGAAGGAGCTGGATCTCGATCTCAACGAACTCCCTCCGGAGGAAATGGCGTGA 696 0.6121 MAPREKSAAVKSNAHGDLKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAARDFRGAKAKTNFPFPSDNVNHHTSPAQSSTIDSSSRDREPARKTDSSSFDLNLSSHAGGSVTSSVRFPFQQQFPLPAAVFPGTLPQVNRAFYLDAVLRASLAAGQAFHGIVFDQRRSPAGEYRSGGVQSDSDSSTVIDLNVRDDEKTPRKELDLDLNELPPEEMA 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1297 231 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Alju03g1297 231 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Alju03g1297 231 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Alju03g1297 231 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Alju03g1297 231 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 201 - -
Alju03g1297 231 MobiDBLite consensus disorder prediction 203 223 - -
Alju03g1297 231 MobiDBLite consensus disorder prediction 185 231 - -
Alju03g1297 231 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Alju03g1297 231 MobiDBLite consensus disorder prediction 79 100 - -
Alju03g1297 231 MobiDBLite consensus disorder prediction 77 119 - -
Alju03g1297 231 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Alju03g1297 231 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Alju03g1297 231 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Alju03g1297 231 FunFam Ethylene-responsive transcription factor 2 21 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1297 Alju-ChrAlju03 41559230 41559925 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1297 1 227 AP2-EREBP Transcription Factor Family AT5G44210 40.083 2.12e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju03g1297 AP2 1.2e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g1297 03 41559230 41559925 Alju03g1297 03 41559230 41559925 ECH
Alju02g0771 02 5699892 5700530 Alju03g1297 03 41559230 41559925 ECH