Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1295 ATGGCTTCTTCTTCGTCTTCGCCATCGCCTTCTTCTTCCATGTCGCGCGAGGGTCACTACAGAGGGGTGAGAAAGCGACCTTGGGGACGATACGCCGCCGAGATTCGCGATCCGTGGAAGAAAACGCGCGTTTGGCTGGGCACGTTCGACACGCCGGAAGAGGCGGCGCTGGCCTACGACGGTGCTGCCCGTTCCCTCCGTGGTCCGAAGGCTAAAACCAACTTCCCTGCGGCTCCGGTGGCCACCGGAGGTCTCTCCCTCGACCTCAACATTCCGACCTCTGATCATCGCTGGCCCCCCATCCCCTCTGGTCGCCTCGTGCTGAACGAGCTTCTCCATGCAGGTGTTCTTAAGGACATGTCCTTCGATCATCCTCCGCCCTCGCCTGCACCCCCCATTGCCATGGTTCACAACCGGCGTGACGGTTTTGTCTCCGTGGACGGTGGTGGCCATCATCAGATGCCGGAGAGCTCTCCCACTGCTTCATTCCTCGGTCTTGTTCGGCGAGGCCTGCCGATCGACTTGAACGAACCTCCTCCCGTGTGGCCTTGA 552 0.6123 MASSSSSPSPSSSMSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGPKAKTNFPAAPVATGGLSLDLNIPTSDHRWPPIPSGRLVLNELLHAGVLKDMSFDHPPPSPAPPIAMVHNRRDGFVSVDGGGHHQMPESSPTASFLGLVRRGLPIDLNEPPPVWP 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1295 183 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Alju03g1295 183 MobiDBLite consensus disorder prediction 1 22 - -
Alju03g1295 183 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Alju03g1295 183 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Alju03g1295 183 Pfam AP2 domain 19 68 IPR001471 GO:0003700|GO:0006355
Alju03g1295 183 MobiDBLite consensus disorder prediction 1 16 - -
Alju03g1295 183 FunFam Ethylene-responsive transcription factor 2 19 77 - -
Alju03g1295 183 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 11 108 - -
Alju03g1295 183 Gene3D AP2/ERF domain 19 77 IPR036955 GO:0003700|GO:0006355
Alju03g1295 183 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Alju03g1295 183 SUPERFAMILY DNA-binding domain 19 77 IPR016177 GO:0003677
Alju03g1295 183 CDD AP2 19 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1295 Alju-ChrAlju03 41533899 41534450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1295 11 182 AP2-EREBP Transcription Factor Family AT1G28360 46.860 6.19e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju03g1295 AP2 1.7e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g1295 03 41533899 41534450 Alju03g1295 03 41533899 41534450 ECH