Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju03g1289 | ATGCCAGCACAGAAGCGCTTGTTCGATGCACCAGAAGAGGATGCTTTACACAGCGAGAGGAACCACCATGATAAGCCAGAAGATGGATTGGAATCCGATCGAAGCCCTTCGGAGAGCACCGGCGACAAAGAAGAGTTTGTTGTTATAAAATTGTCAGATGTACGCAAGGAAGTTCAGTGTCCTATCTGCCTAGGCATCATTCGTAAAACAAGAACCGTAATGGAATGCCTGCACCGCTTTTGCAGAGAGTGTATAGACAAATCCATGCGCCTTGGCAACAATGAGTGCCCTGCCTGCCGCACACATTGTGCTAGCCGACGCTCACTGAGAGATGACCCAAACTATGATGCTTTAATTGCTGCTCTCTATCCAGATATAGACAAGTATGAGCGGGAGGAATTGGCTCTGCATGAAGATGAAAAAGCTCGCAATAAGCAGATCCAAGAATCTATTGCTCAGACTCTTCAACGACAAGCAGAAGCGCTGGGTAAAAAACGCAATCCCAAAGCAATTACAAGGAGGTCACAAGGTAACTATCGAACTTCACATTCGAGGGCAAGAAGGAATTGTAGAAGTACAATTGAACTTCAGGGATCTGATGACACTGAGGACATGAATGATGATGATGGGGCTAAGGGTTCTTCTTCTGGTGATGAGCTGATAGAAATCAGATCAAAAAGATGTAAAAGAGGTCCAGAAGCACAATTTCCTCCGCTCTCTGCAACCACTGCTGCAGATGGTGCCAGTGATGAAAATGCTCCTGAACTGAGTAGAGAATTCTTGAGTCCTTCTAGTACACTCGCCTGGGGAAAAAATGGTCACCGGAGTCACACCCGAGTCAATGGCAAGAATGCCAGAAATAGTCGCATTGCCAAATTGATTGATAATCTCCGTAGCCTGGAAGAAAATGATGATGAGTTGGGTGTCTGCCTCATGCTTGTGCCTTATGATGAGAAAAGGACACCAAGTTTGCAGCAGCCATACCTCTGCTGCAGACCTACATTGTCCGTCAGGCACCTGTGCCAGTATGTTGCCCTTCAAACAGCTGTACAGGTTGATGAGGTTGAGATATGCTTGGTAAAAGAGCAGCAAGCCAACATTATTAGAGCTGCAGGCTTAGTAGATCCATGCAAAGATAATTTGCAAGTGTTGAAAGAGCAGGAAACTTTGGCCGAACTTAAACCTGATAATTTTAGCTGTGGCCATCTGCTTATGGCATATAAGAGGAAACTGTTGAACTCAACTGCGGCTAGCTTGAGGTGA | 1263 | 0.4576 | MPAQKRLFDAPEEDALHSERNHHDKPEDGLESDRSPSESTGDKEEFVVIKLSDVRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEREELALHEDEKARNKQIQESIAQTLQRQAEALGKKRNPKAITRRSQGNYRTSHSRARRNCRSTIELQGSDDTEDMNDDDGAKGSSSGDELIEIRSKRCKRGPEAQFPPLSATTAADGASDENAPELSREFLSPSSTLAWGKNGHRSHTRVNGKNARNSRIAKLIDNLRSLEENDDELGVCLMLVPYDEKRTPSLQQPYLCCRPTLSVRHLCQYVALQTAVQVDEVEICLVKEQQANIIRAAGLVDPCKDNLQVLKEQETLAELKPDNFSCGHLLMAYKRKLLNSTAASLR | 420 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju03g1289 | 420 | SUPERFAMILY | RING/U-box | 47 | 131 | - | - | |
| Alju03g1289 | 420 | Coils | Coil | 137 | 157 | - | - | |
| Alju03g1289 | 420 | MobiDBLite | consensus disorder prediction | 159 | 284 | - | - | |
| Alju03g1289 | 420 | CDD | RING-HC_RING1-like | 57 | 122 | - | - | |
| Alju03g1289 | 420 | MobiDBLite | consensus disorder prediction | 258 | 272 | - | - | |
| Alju03g1289 | 420 | MobiDBLite | consensus disorder prediction | 208 | 231 | - | - | |
| Alju03g1289 | 420 | Coils | Coil | 283 | 303 | - | - | |
| Alju03g1289 | 420 | SMART | ring_2 | 60 | 99 | IPR001841 | - | |
| Alju03g1289 | 420 | MobiDBLite | consensus disorder prediction | 7 | 43 | - | - | |
| Alju03g1289 | 420 | ProSiteProfiles | Zinc finger RING-type profile. | 60 | 100 | IPR001841 | - | |
| Alju03g1289 | 420 | PANTHER | OS11G0578200 PROTEIN | 15 | 410 | IPR044592 | - | |
| Alju03g1289 | 420 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
| Alju03g1289 | 420 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 8 | 130 | IPR013083 | - | |
| Alju03g1289 | 420 | Pfam | Zinc finger, C3HC4 type (RING finger) | 59 | 99 | - | - | |
| Alju03g1289 | 420 | ProSitePatterns | Zinc finger RING-type signature. | 76 | 85 | IPR017907 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju03g1289 | Alju-ChrAlju03 | 41472187 | 41476373 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju03g1289 | 58 | 203 | C3H Transcription Factor Family | AT2G30580 | 29.605 | 1.23e-07 | 51.2 |