Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1286 ATGGCTCTTTTCCCCAAATCTTGCTTTTTGTATCTCATTGATATCTTTTCCTCTCTCACACACTCTAAACTTCCCTATATGGAAAGAAGCGGAGAGGGAAAGAGGAGCTTCAAGTACAAGGTGGTGGAGGAGGAGGAAGAGGTTGAAGATGAAGAAGAAGAAGATGAAGTTGATGAGTTCAATTTAAGAGAAGAAGATGGGAGGAACAAGAAGATGAGAGATCTGTACAACAGCAAGAGAGGGTCTTCTTCGTCTTCCTCGTCGTCGTCAATGGCACCTTCATGTCAGGTGGAAAGCTGTGAGAATGATCTGAGTGAGGCTAAGCACTACCATCGCCGCCATAAGGTCTGTGAGTTCCATGCCAAGGCTTCTTCTGTCCTCATTTCTGGCTTGCAACAAAGGTTTTGCCAACAATGCAGCAGGTTTCATGAGGTGGGAGAATTTGATGACGCCAAGAGGAGCTGTAGGAAGCGTTTGGCTGGACACAATGAAAGGCGTCGAAGGAATGCATCTTAA 516 0.4574 MALFPKSCFLYLIDIFSSLTHSKLPYMERSGEGKRSFKYKVVEEEEEVEDEEEEDEVDEFNLREEDGRNKKMRDLYNSKRGSSSSSSSSSMAPSCQVESCENDLSEAKHYHRRHKVCEFHAKASSVLISGLQQRFCQQCSRFHEVGEFDDAKRSCRKRLAGHNERRRRNAS 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1286 171 Gene3D - 85 156 IPR036893 GO:0003677|GO:0005634
Alju03g1286 171 MobiDBLite consensus disorder prediction 43 94 - -
Alju03g1286 171 FunFam Squamosa promoter-binding-like protein 14 86 156 - -
Alju03g1286 171 Pfam SBP domain 95 168 IPR004333 GO:0003677
Alju03g1286 171 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 78 169 IPR044817 GO:0003677
Alju03g1286 171 MobiDBLite consensus disorder prediction 44 61 - -
Alju03g1286 171 MobiDBLite consensus disorder prediction 78 94 - -
Alju03g1286 171 MobiDBLite consensus disorder prediction 62 77 - -
Alju03g1286 171 SUPERFAMILY SBT domain 93 169 IPR036893 GO:0003677|GO:0005634
Alju03g1286 171 ProSiteProfiles Zinc finger SBP-type profile. 92 169 IPR004333 GO:0003677
Alju03g1286 171 Coils Coil 34 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1286 Alju-ChrAlju03 41441855 41443345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1286 75 171 SBP-box Gene Family AT2G33810 63.918 1.55e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Alju03g1286 SBP 3.8e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g1286 03 41441855 41443345 Alju03g1286 03 41441855 41443345 ECH
Alju02g0766 02 5655208 5655993 Alju03g1286 03 41441855 41443345 ECH