Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1285 ATGTTTAAGTCGCTACCCTCTTCCTCCCTCCTCCATTATCTCATCACTTTGCTTCATTCCAAAACCTCCCTCTATTTTCTTTTCTTTGTCTGTTTCAATCTTTCAATGTTGGGTAACTGTGAGAAAATGGTGGTCATGCCCCCAACAACTGATAACGAATGGCCACAGATTGTTGATCATCATCAAAAGATCTCGTCGTCGTCGATGGGTTCCGGTGGGAGGACGGCAACAATGGAGAAACCTTCCGGTCTGGAGCAACAATCTCTCAAGTGTCCTCGTTGTGAATCAACCAACACTAAGTTCTGCTACTACAACAACTATAGCTTGTCTCAGCCAAGACACTTCTGCAAATCCTGCAAGCGATATTGGACCAGAGGAGGTACTCTGAGAAATGTTCCTGTGGGAGGTGGTTGCAGGAAGAACAAGCGCGTGAAGCGTCAAACGCCTTCTTCTGCTTCTGATCACACTACTACTCCTTCTTCTTCTTCATCTTCTCCTAGTGCTGCTAATAATTCAAACCTTCCTTCTCATCAACCCCACATCGATTCTCATCATGTCACTCCTCTGTTTTATGGGTTACCACCTGGTAACTCTCTTAATTCTGATATGAATCTTGCGTTCCCAAGGTTCAATAATTCTGGGTCGTACGATCATCTGAATACCCTGGGATTGGCTAGTTTTTCTTCTGGGTATACCTCAAACGATTCACTTTTCTCGAATTACAATTCCATCTTTGGTGGTTCTTCTTCAGCTGCCATATCTTCCCTGTTAAACCCTAGTAGCACTAATCTGCAGCAACAGAAGCTCATCCATGGAGGCTTGAAGGATGATGTTTTAGGCACTAATAACACTTTCCAAGGCCTATTAGACCCATTGGAAGATCAGATGAAAGGGGATGAAGAAAGACCAAACCAGATCATGGAACATGGGAGCTTGTTCGATTTCTATTCACCTTATTATTGGAATGATCAAACTAACAATGTTGGTCCTTCAGTCACTTCCATGATCCAGTGA 1014 0.4349 MFKSLPSSSLLHYLITLLHSKTSLYFLFFVCFNLSMLGNCEKMVVMPPTTDNEWPQIVDHHQKISSSSMGSGGRTATMEKPSGLEQQSLKCPRCESTNTKFCYYNNYSLSQPRHFCKSCKRYWTRGGTLRNVPVGGGCRKNKRVKRQTPSSASDHTTTPSSSSSSPSAANNSNLPSHQPHIDSHHVTPLFYGLPPGNSLNSDMNLAFPRFNNSGSYDHLNTLGLASFSSGYTSNDSLFSNYNSIFGGSSSAAISSLLNPSSTNLQQQKLIHGGLKDDVLGTNNTFQGLLDPLEDQMKGDEERPNQIMEHGSLFDFYSPYYWNDQTNNVGPSVTSMIQ 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1285 337 MobiDBLite consensus disorder prediction 150 180 - -
Alju03g1285 337 Pfam Dof domain, zinc finger 87 143 IPR003851 GO:0003677|GO:0006355
Alju03g1285 337 MobiDBLite consensus disorder prediction 133 187 - -
Alju03g1285 337 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 77 249 IPR045174 GO:0003700|GO:0006355
Alju03g1285 337 ProSiteProfiles Zinc finger Dof-type profile. 89 143 IPR003851 GO:0003677|GO:0006355
Alju03g1285 337 ProSitePatterns Zinc finger Dof-type signature. 91 127 IPR003851 GO:0003677|GO:0006355
Alju03g1285 337 MobiDBLite consensus disorder prediction 64 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1285 Alju-ChrAlju03 41421972 41423171 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1285 36 193 C2C2-Dof Transcription Factor Family AT1G28310 48.447 7.83e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Alju03g1285 zf-Dof 2.7e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g1285 03 41421972 41423171 Alju03g1285 03 41421972 41423171 CCT
Alju03g1285 03 41421972 41423171 Alju03g1285 03 41421972 41423171 ECH