Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1283 ATGCATCAATGCAAGAATAAAAATGCAAGGGAGCATCGTCGCCACGGTAGTGAGCTACTAGTGCTGATCCATCGGGAAGCCTTGAGGATAAGCCTCACCTTCGGAATTAACCCAAATCCTCTCTTCACTTCTGAGGCTACTTCCATGGCTGCATCTTCTGCAGCTCTCAATTCCCTATCTTCTCTCTCCCTTCCATCTTCTTCCCGCTTCTCTCTCTTTCCCTCCGCCAAATTCACCTTCTCTCTCCTCGCCAAAACCCCACAACCATTTCTCTCTACCTCCTCATCCCCCATTATCCCCAAACCCAAATCCGCGTCCTCCGATGACATTGATACCTCCTTCTTCGACAATGTAAGGCCAGAAGAAGACGTTGCCTTCAACCCCCCGGAACCTCCCGAAGGCTTCGTTCCCCCTCGTCCCGTCGACGACGGTCCGATGGAGACCGAAGAGGAAATCTCCGCCGCTTATGAGGAGCTTTATGGACCTGCATACAGCGGTGTTTCTGTTCTGGGCAACGATTTGTATGTAATGGACTCCAAATTTAAAAAAGAAACTGGGTTTCGCTCCAGGGGGAAGAAAGATAAGGTTAAGGATGGATTTGAAGAAAGGGTTGTACAGGTCAGAAGGGTGAACAAGGTTGTAAAAGGAGGGAAGCAGTTGAATTTCAGGGCAGTTGTGGTTGTGGGTGACAAGAAAGGCCAAGTGGGTGTAGGAGTTGGGAAAGCAATGGACGTTATAAATGCAGTTCAGAAATCTGCTGTAAATGCAAGGCGGAATATCATCACAGTGCCTATGACTAAGTACCTGACTTTCCCTCATAGATCTGAGGGAGATTATGGGGCAGCAAAGGTGATGCTTAGACCTGCTTCACCTGGTACCGGAGTGATCGCAGGTGGATCTGTGAGAATTGTTCTAGAAATGGCAGGCGTTGAGAATGCTTTGGGAAAGCAATTAGGGAGCGATAATGCCCTCAACAATGCCAGAGCAACAGTTGTTGCTGTGCAGAAAATGAGGCAGTTCAGCCAAGTCGCCGAGGAGCGAGGTATCCCAATGGAAGAACTATGGAAGTAA 1071 0.4883 MHQCKNKNAREHRRHGSELLVLIHREALRISLTFGINPNPLFTSEATSMAASSAALNSLSSLSLPSSSRFSLFPSAKFTFSLLAKTPQPFLSTSSSPIIPKPKSASSDDIDTSFFDNVRPEEDVAFNPPEPPEGFVPPRPVDDGPMETEEEISAAYEELYGPAYSGVSVLGNDLYVMDSKFKKETGFRSRGKKDKVKDGFEERVVQVRRVNKVVKGGKQLNFRAVVVVGDKKGQVGVGVGKAMDVINAVQKSAVNARRNIITVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGSVRIVLEMAGVENALGKQLGSDNALNNARATVVAVQKMRQFSQVAEERGIPMEELWK 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1283 356 Hamap 30S ribosomal protein S5 [rpsE]. 177 353 IPR005712 GO:0003735|GO:0006412|GO:0015935
Alju03g1283 356 FunFam 30S ribosomal protein S5 265 356 - -
Alju03g1283 356 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN S5 182 351 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Alju03g1283 356 SUPERFAMILY Ribosomal protein S5 domain 2-like 270 348 IPR020568 -
Alju03g1283 356 NCBIfam 30S ribosomal protein S5 198 353 IPR005712 GO:0003735|GO:0006412|GO:0015935
Alju03g1283 356 ProSiteProfiles S5 double stranded RNA-binding domain profile. 200 263 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Alju03g1283 356 ProSitePatterns Ribosomal protein S5 signature. 217 249 IPR018192 -
Alju03g1283 356 SUPERFAMILY dsRNA-binding domain-like 196 265 - -
Alju03g1283 356 Gene3D - 267 355 IPR014721 -
Alju03g1283 356 Pfam Ribosomal protein S5, C-terminal domain 277 347 IPR005324 GO:0003735|GO:0005840|GO:0006412
Alju03g1283 356 Pfam Ribosomal protein S5, N-terminal domain 200 264 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Alju03g1283 356 Gene3D - 191 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1283 Alju-ChrAlju03 41388274 41391013 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1283 200 340 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 29.530 6.98e-14 69.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g1283 03 41388274 41391013 Alju03g1283 03 41388274 41391013 ECH