Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1282 ATGGCCTCAACTCTCCACTGGGACCCCGATAAAATGCTTCAACTTTACATTCTGGATTATATGAAGAGAAGGGGAATGAATACGACAGCTGAAATTTTCCAAAAGGAATCAGATGTTATTGACGCTCCCGTTGTGATTCAGTCTCCAGAAGGTTTCTTGCATGAATGGTGGTCTGTTTTCTATGACATATATTCCTCAAGGAATCTGAAGCATGAGGACATTGGGCCAGAAGCCTGTAGTAATGTGGAACTTCAAAGGACCAATAGTGGAAGAAGAAATCTCCCTCCTAGAATCCCTCAGCTATCTAAGCAGAGACCTCAACTGCTTCAAATCGATTCCACCACTAACAACATGATGGAGCAACCGGCTGCCTGCCTGTTGCCACCGAATGTATATGAGAGAGAGTATCTTGGATATCTAGCCGAAGATTCCAATCCAAGTTTACAACTTATCAATGCAAAGAGACTGAAGTTTGAGGATAGTGGAATTGGCCTTCAGCCAGGAAGCAATATACCCGTGGACCCCCTGGGTAAAGTGCAAAGAGGAGTTAATGAAGGTCTCAATCTGGTGCCACTGGATGGATATCCTTTAAATCTCGTCCTTAGTATTATCTCATTATTGACCAAGGCTCCCATGGTACGGCTGGAGGAGGTACTCACTTCACTTTTGCAAGCATCAAACTATGAGCAACAGTTTCAGGGGCTAGATACACAAAATCAGCAAGCACTTGCATGTACCCCTAGGAGTCAGACATCCATATGTCTTGGAAACTCTTCCATATGCATCAGCCAAGATCCAAGGATTCCCCTGGTTCAAACTGATTTATGTGAAGATATGCAGGACTGTATGAATGCAGCAGATGGGAGACCTGTAGATAGAAACATTGTGCCTTTGTCTGATGAGAATGAACATGCTGATCAAAGAACTGGACCTTCCAGGAATCTGAAACTTACTTTTGCGACATGTGATATGAGGGAAGGTTTTTCATTTGAAGAGGTTGGGTGTCTTCACTCAAGCAAAAGCGAAGTTTTGTCCTGCCATTTTTCGTCTGACGGGAAGGCTTTAGCAAGTGCTGGACATGAGAAGAAGGTTTTCGTTTGGAATATGGAAACTTTTGATTGTGTTAGTACTTCAGATGCACATTCACGTCTCATTACTGATGTTCGGTTCAGACCAGGCTCAACCATATTTGCAACATCTTCTGCTGATAAAACTGTAAAAATATGGGATGCGGCCAAAGCAAACAAATCATTGTTTGAGCTTACCGGGCATGCTGAACAAGTAATGTCATTGGACTTCCACCCAAGAAAGGTGGACCTTCTTTGTTCCTGCGATAGCAATGGCATAATGCGATTGTGGAATGTCAACCAAGGCATTTGTGTGCGTATAAACAAGGGCGGCAGTAAACAAGTCAGATTCCAGCCTCGAATTGCCAACTTTTTGGCTGCTGCTGCAGGAAATATTATTAATGTAATTGATATCGAGGATGACAGACTTCTATACAAGCTGAAGGGACATGTTAAAGATGTTATTTCCATTTGCTGGGACGCAACGGGAAACTATCTTGCTTCTGTAAGTGAAGATAGTGCACGTGTGTGGTCCGTTACGTCTGATGGAAAATGCATACAAGTACTGCATTCAAATAGAAACAAGTTTCAATCGTGCATATTTCATCCCGTATATTGTAACCTCTTAATCATTGGTTGCAATCAGTCCCTGGAGTTCTGGATTCCAACTGAGGGCTGTAAATTATGGACTCATAATACTGCTCACAAGGACGTAGTCGCTGGACTAGGAGCTTCCCCAGAAAATCAAATGATGGCCTCTGCTAGCCATGATCATACCGTGAAACTTTGGAAATAA 1863 0.4289 MASTLHWDPDKMLQLYILDYMKRRGMNTTAEIFQKESDVIDAPVVIQSPEGFLHEWWSVFYDIYSSRNLKHEDIGPEACSNVELQRTNSGRRNLPPRIPQLSKQRPQLLQIDSTTNNMMEQPAACLLPPNVYEREYLGYLAEDSNPSLQLINAKRLKFEDSGIGLQPGSNIPVDPLGKVQRGVNEGLNLVPLDGYPLNLVLSIISLLTKAPMVRLEEVLTSLLQASNYEQQFQGLDTQNQQALACTPRSQTSICLGNSSICISQDPRIPLVQTDLCEDMQDCMNAADGRPVDRNIVPLSDENEHADQRTGPSRNLKLTFATCDMREGFSFEEVGCLHSSKSEVLSCHFSSDGKALASAGHEKKVFVWNMETFDCVSTSDAHSRLITDVRFRPGSTIFATSSADKTVKIWDAAKANKSLFELTGHAEQVMSLDFHPRKVDLLCSCDSNGIMRLWNVNQGICVRINKGGSKQVRFQPRIANFLAAAAGNIINVIDIEDDRLLYKLKGHVKDVISICWDATGNYLASVSEDSARVWSVTSDGKCIQVLHSNRNKFQSCIFHPVYCNLLIIGCNQSLEFWIPTEGCKLWTHNTAHKDVVAGLGASPENQMMASASHDHTVKLWK 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1282 620 ProSitePatterns Trp-Asp (WD) repeats signature. 441 455 IPR019775 -
Alju03g1282 620 ProSiteProfiles Trp-Asp (WD) repeats profile. 588 620 IPR001680 GO:0005515
Alju03g1282 620 ProSiteProfiles Trp-Asp (WD) repeats profile. 421 463 IPR001680 GO:0005515
Alju03g1282 620 ProSiteProfiles LIS1 homology (LisH) motif profile. 9 41 IPR006594 GO:0005515
Alju03g1282 620 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 620 IPR044716 GO:0003714
Alju03g1282 620 SMART Lish 9 41 IPR006594 GO:0005515
Alju03g1282 620 SMART WD40_4 538 577 IPR001680 GO:0005515
Alju03g1282 620 SMART WD40_4 580 620 IPR001680 GO:0005515
Alju03g1282 620 SMART WD40_4 329 368 IPR001680 GO:0005515
Alju03g1282 620 SMART WD40_4 371 410 IPR001680 GO:0005515
Alju03g1282 620 SMART WD40_4 414 454 IPR001680 GO:0005515
Alju03g1282 620 SMART WD40_4 496 534 IPR001680 GO:0005515
Alju03g1282 620 PRINTS G protein beta WD-40 repeat signature 397 411 IPR020472 -
Alju03g1282 620 PRINTS G protein beta WD-40 repeat signature 355 369 IPR020472 -
Alju03g1282 620 PRINTS G protein beta WD-40 repeat signature 607 620 IPR020472 -
Alju03g1282 620 CDD WD40 332 620 - -
Alju03g1282 620 Gene3D - 309 466 IPR015943 GO:0005515
Alju03g1282 620 Gene3D - 467 620 IPR015943 GO:0005515
Alju03g1282 620 Pfam WD domain, G-beta repeat 499 534 IPR001680 GO:0005515
Alju03g1282 620 Pfam WD domain, G-beta repeat 587 620 IPR001680 GO:0005515
Alju03g1282 620 Pfam WD domain, G-beta repeat 337 368 IPR001680 GO:0005515
Alju03g1282 620 Pfam WD domain, G-beta repeat 373 410 IPR001680 GO:0005515
Alju03g1282 620 Pfam WD domain, G-beta repeat 417 454 IPR001680 GO:0005515
Alju03g1282 620 ProSiteProfiles Trp-Asp (WD) repeats profile. 336 377 IPR001680 GO:0005515
Alju03g1282 620 SUPERFAMILY WD40 repeat-like 329 620 IPR036322 GO:0005515
Alju03g1282 620 ProSiteProfiles Trp-Asp (WD) repeats profile. 378 410 IPR001680 GO:0005515
Alju03g1282 620 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 588 620 - -
Alju03g1282 620 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 378 410 - -
Alju03g1282 620 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 421 458 - -
Alju03g1282 620 Pfam LisH 11 37 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1282 Alju-ChrAlju03 41381365 41387694 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1282 295 535 U-box Gene Family AT2G33340 24.900 1.81e-16 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Alju03g1282 WD40 0.0029 CL0186