Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1275 ATGATGGAGAAGGTTCCAGCTCCTTCGCCTAGAGGAGATAGGAAAGTGATAGAGAGGAACCGAAGAAGCCAAATGAGGGCTCTTTACTCCAACCTCAACTCACTTGTCCCTCATCAATCCTCAAGGGAAGTGATTTCTGTGCCGGATCAGCTGGCCGAAGCTGCTAATTACATAAAGAAGCTTCAGATAAGGTTGGAGAAGATGAAAGAGAAGAAACTCGACCTTATGGGAACCGAAAGTAGTACTAAGAGAAATAATTCTAATTATGGGGGTTTAATCAACAATAATAGAGGAATCATCATGAACGGGTCAAAATCGCCTAGAATTGAGATTCACCACATGGGTTCAGCATTAAGCGTTTCAGTGATTACTGGCTTGGATTGCCACTTCATTTTCAACGAGTTCATTCGCATTCTTTACCAAGAACAAGCTGACATTGTTAACGCCAGTTACACAGTCCTTCAAGATTCTGTTTTTCACTCCATTCACTGTCAGATAGGAGAATGTGGTAACAGAGCTGAGAGGATATCGGAGAGATTAAAGAGGTTTGTGTCTGGTTCTGATCTTGCTTTTCGAAGACAATGA 585 0.4205 MMEKVPAPSPRGDRKVIERNRRSQMRALYSNLNSLVPHQSSREVISVPDQLAEAANYIKKLQIRLEKMKEKKLDLMGTESSTKRNNSNYGGLINNNRGIIMNGSKSPRIEIHHMGSALSVSVITGLDCHFIFNEFIRILYQEQADIVNASYTVLQDSVFHSIHCQIGECGNRAERISERLKRFVSGSDLAFRRQ 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1275 194 Gene3D - 6 89 IPR036638 GO:0046983
Alju03g1275 194 Pfam Helix-loop-helix DNA-binding domain 13 62 IPR011598 GO:0046983
Alju03g1275 194 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 9 61 IPR011598 GO:0046983
Alju03g1275 194 SMART finulus 15 67 IPR011598 GO:0046983
Alju03g1275 194 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 14 75 IPR036638 GO:0046983
Alju03g1275 194 Coils Coil 51 78 - -
Alju03g1275 194 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 12 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1275 Alju-ChrAlju03 41305344 41306266 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1275 13 186 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 42.938 3.08e-43 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju03g1275 HLH 3.7e-07 No_clan