Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1270 ATGGACAACAACAACATTCTGGCTTCTTCATCCGGAGGAGGCGACAGAAAAGTGATAGAGAGAAACCGAAGAAGCCAAATGAGGGCTCTATGCTTCCAGCTCAGCTCACTCGTCCCTCGTCAATCCTCATCACCCGAGGTGATTTCGCTGTCAGATCAGCTGGGTGAAGCAGCCACCTACATCAAGAAGCTTCAGATAAAGTTGGAGAAGATGAATCAGAAGAAGCTCAGCCTTATTGGAACGACCAGCAACGAGCCAAACCTTACAAGTGAGAGTCCAATTAGTAATAACAATAATAGAGGGATCTTTATGGGGTCTAAATCACCCCAAGTTGCGATTCACCAAATGGGTTCAACTTTAGAGGTTTCTGTAATTACTGGCTTGGATTGCCACTTCATTTTCGGCGACTTCATTCGCATCCTTCATGACGAACAGGCCGATGTTGTTAATGCCAGTTACTCAGTCGTTCAAGATACTGTTTTTCATACCATTCACTGTCAGGTAGGAGAATGTGGTGATAGAGCTGGGAGGATATCAGAGAGATTAAAGAAGTTTGTGTATGGTTCTGGTGCTTTTTGA 579 0.4456 MDNNNILASSSGGGDRKVIERNRRSQMRALCFQLSSLVPRQSSSPEVISLSDQLGEAATYIKKLQIKLEKMNQKKLSLIGTTSNEPNLTSESPISNNNNRGIFMGSKSPQVAIHQMGSTLEVSVITGLDCHFIFGDFIRILHDEQADVVNASYSVVQDTVFHTIHCQVGECGDRAGRISERLKKFVYGSGAF 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1270 192 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 14 187 - -
Alju03g1270 192 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 17 78 IPR036638 GO:0046983
Alju03g1270 192 Gene3D - 14 90 IPR036638 GO:0046983
Alju03g1270 192 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 64 IPR011598 GO:0046983
Alju03g1270 192 Pfam Helix-loop-helix DNA-binding domain 17 65 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1270 Alju-ChrAlju03 41240549 41241557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1270 11 186 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 42.458 1.51e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju03g1270 HLH 2.4e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g1270 03 41240549 41241557 Alju03g1270 03 41240549 41241557 CCT