Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1263 ATGACGAGTTGGTTCGGGTCCGCTCAGACATCCATGATCGTCACGAACACGCCGTCGCAGGACCTCGCTCTTACCAATCTCGCCTTCTGCTCACCCTCTGATCTTCAGAACTTCGCTATCCCGGGTTTCAAAAACATCTTCCTCGCTCTGCGTCGGTGTGCCAAAGTTTCTGCTGCTGAGTCGATACCTGTGAGCAGATTCGTTCCACCTGAAAATTTCAACCTAGCAATGTTAACCCTTGAGTTGGACTTCATCAAAAAAGGAAGTAAAAGCGAACAGATTGATGCAGTTCAGCTGGGTAAGCAGCTCAAAAAGAGATTTGTAAACCAGGTCATGACTGCAGGGCAGAAGGTGTTGTTTGAGTATCATGGAAATAATTATAGTTTCACAGTCAGTCAAGCTGTTGTTGAGGGTCAAGAAAAAAGTTCTCTTGAAAGGGGGATGCTATTGGATGACACATACATTGTATTTGAAACATCACGTGATAGTGGAATAAAGATTGTCAATCAGCGTGAGGCTGCGACAAGCAACATTTTTAAGCAGAAAGAGTTCAATCTTCAGTCACTGGGTATTGGGGGTTTGAGTGCAGAATTTGCAGATATATTTCGAAGAGCTTTTGCATCTCGTGTTTTCCCTCCACATGTGACTTCTAAACTAGGGATCAAGCATGTGAAGGGAATGCTTCTTTATGGACCTCCTGGCACCGGAAAAACTCTCATGGCACGCCAAATTGGAAAAATTTTGAATGGGAAGGAACCAAAGATTGTAAATGGTCCCGAAGTCTTGAGTAAATTTGTTGGTGAAACTGAGAAGAATGTAAGGGACCTCTTTGCTGATGCTGAAAGGGATCAGAAGACTCTAGGGGATGAAAGTGAATTGCATGTCATAATTTTTGATGAAATTGATGCTATTTGCAAGTCAAGAGGTTCAACTCGAGATGGCACGGGAGTTCATGATAGTATTGTGAATCAACTTCTCACTAAGATAGATGGTGTGGAGTCACTGAATAATGTTTTGCTTATTGGAATGACCAACAGGAAGGACATGCTGGATGAAGCTCTTTTGAGACCGGGGCGACTAGAAGTCCAAGTTGAAATAAGCCTTCCTGATGAAAATGGCCGATTGCAGATTCTTCAAATTCATACTAACAAGATGAAGGACAATTCTTTTTTATCTCCTGATGTGAATCTTCAAGAGCTTGCTGCTCGAACCAAAAACTATAGTGGTGCAGAACTTGAAGGTGTTGTGAAGAGTGCAGTTTCATTTGCTTTAAATAGACAACTTAGTCTAGATGATCTCACTAAGCCAGTGGAGGAAGAGAATATCAAGGTTACAATGGATGATTTTTTGAATGCACTTCATGAAGTTGTTCCTGCATTTGGAGCTTCAACTGATGACCTTGAGAGATGCAGACTTGGTGGCATGGTGGATTGTGGTGATAGACATAAGCACATTTACCAAAGAGCTATGCTACTTGTGGAGCAAGTTAAAGTGAGCAAAGGAAGCCCACTTGTTACTTGTCTTTTGGAAGGCCCTAGTGGCAGTGGTAAAACTGCACTTTCAGCTACTGTTGGCATCGACAGCGATTTCCCATATGTCAAGATTGTTTCAGCTGAATCAATGATTGGTCTCCACGAAAGCACTAAATGTGCACAGATTATCAAGTTTTTTGAGGATGCATACAAGTCACCATTGAGCGTCATTATTCTTGATGACATTGAGAGATTATTGGAGTATGTAGCCATTGGTCCACGGTTTTCAAATTTGATTTCTCAGACACTACTGGTCCTGCTAAAACGGCTTCCTCCAAAGGGGAAAAAGCTCCTGGTTATTGGTACAACAAGTCAACTAATTTTCTTGGACTCAATTGGATTCTGTGATACTTTCTCTGTCACTTACCACGTTCCTACATTGAACACAAATGATGTGAAGAAGGTTCTAAAACAGTTGAATGTCTTCGATGAGGGTGATGTTGATGATGCTGCGGAGGCCCTGAATGATATGCCTATCAAGAAGCTATACACGTTGACTGAGATGGCGGCCCAAGGTGAACGTGGTGGATCTGCAGAAGCAATCTATTCTGGCAAAGAGAAGATAAAGCTCTCTCACTTCTATGATTGCCTTCAGGATGTCGTCCGAGTATGA 2145 0.4238 MTSWFGSAQTSMIVTNTPSQDLALTNLAFCSPSDLQNFAIPGFKNIFLALRRCAKVSAAESIPVSRFVPPENFNLAMLTLELDFIKKGSKSEQIDAVQLGKQLKKRFVNQVMTAGQKVLFEYHGNNYSFTVSQAVVEGQEKSSLERGMLLDDTYIVFETSRDSGIKIVNQREAATSNIFKQKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAERDQKTLGDESELHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKDNSFLSPDVNLQELAARTKNYSGAELEGVVKSAVSFALNRQLSLDDLTKPVEEENIKVTMDDFLNALHEVVPAFGASTDDLERCRLGGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALSATVGIDSDFPYVKIVSAESMIGLHESTKCAQIIKFFEDAYKSPLSVIILDDIERLLEYVAIGPRFSNLISQTLLVLLKRLPPKGKKLLVIGTTSQLIFLDSIGFCDTFSVTYHVPTLNTNDVKKVLKQLNVFDEGDVDDAAEALNDMPIKKLYTLTEMAAQGERGGSAEAIYSGKEKIKLSHFYDCLQDVVRV 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1263 714 Gene3D - 176 368 IPR027417 -
Alju03g1263 714 FunFam Vesicular-fusion ATPase SEC18 179 369 - -
Alju03g1263 714 Gene3D - 466 636 IPR027417 -
Alju03g1263 714 FunFam Vesicle-fusing ATPase 71 167 - -
Alju03g1263 714 Pfam AAA+ lid domain 394 449 IPR041569 -
Alju03g1263 714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 467 674 IPR027417 -
Alju03g1263 714 SUPERFAMILY Cdc48 domain 2-like 70 172 IPR029067 -
Alju03g1263 714 SMART AAA_5 503 624 IPR003593 GO:0016887
Alju03g1263 714 SMART AAA_5 223 370 IPR003593 GO:0016887
Alju03g1263 714 FunFam Vesicle-fusing ATPase 369 456 - -
Alju03g1263 714 CDD RecA-like_NSF-SEC18_r1-like 190 366 - -
Alju03g1263 714 PANTHER VESICULAR-FUSION PROTEIN NSF 10 713 IPR039812 GO:0016887|GO:0035494
Alju03g1263 714 SUPERFAMILY ADC-like 11 70 IPR009010 -
Alju03g1263 714 FunFam vesicle-fusing ATPase isoform X1 465 636 - -
Alju03g1263 714 Gene3D - 369 456 - -
Alju03g1263 714 Gene3D - 7 66 - -
Alju03g1263 714 Pfam ATPase family associated with various cellular activities (AAA) 508 616 IPR003959 GO:0005524|GO:0016887
Alju03g1263 714 Pfam ATPase family associated with various cellular activities (AAA) 227 367 IPR003959 GO:0005524|GO:0016887
Alju03g1263 714 ProSitePatterns AAA-protein family signature. 338 356 IPR003960 GO:0005524|GO:0016887
Alju03g1263 714 Gene3D - 70 167 - -
Alju03g1263 714 Pfam Cell division protein 48 (CDC48), domain 2 93 138 IPR004201 -
Alju03g1263 714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 466 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1263 Alju-ChrAlju03 41142352 41150638 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1263 191 442 Calmodulin-binding Proteins AT3G56690 33.858 4.75e-30 125