Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1254 ATGAGTGAAGTCTATGAGCGTATATCAAATGAAATTCGATTTTCTTCGGTTTCTCGATATAAACCCCAACATTCTGGAAATGAAAGACGGTTCAATGCTCTGGATTTTTCTTCTTCTGTGATTGGAGGTTCTGATAGGGTGGCTGATCTATCTGGCATCTGATTCATGGCCTTTGAGCACTACATTTCACAAGAATGGAAAAGCATTCCAAGTTCCATGACGAAAGAGACTGGAAATCACAATAGTTGTTTCGATTGCAACATTTGCTTTGACTTTGCTATTGAACCTGTGGTCACCCTCTGTGGTCACCTCTATTGCTGGCCGTGCATCTACAAGTGGCTCCATGTCCAAAGTGCTTCTCTTCCATCCGATGAGCACCCACAATGCCCAGTCTGCAGGGCTGATATATGTCCCACTACCTTGGTCCCCCTATATGGCCGGGGCCAAAACCCGGCTCCTCCCGAGCAAGACACAAAGGCATCGCGTGAGATTTTGATACCACCAAGACCACGAGCTTTTGGCGCTCAAGCTCTGATGTTAGCATCAGCATCATCATCATCATCTCAAGGTGGTCATCATCAGCATCATCCTTATCATTATCCTCATCACAGTCATCAACATTTCAGCTCTCCTCTGTACCAAAGGGTGGAGGATGCCTCATCACAAGTGCTGAATCTCAGCACTACTCTTACACCTCAAGGATTTCACCACCCTGTGGCTGGGATGGTTTATGCCACGGTGTTTGGCAGCCCGGAAAATTTATACGCGTACCCGAATTCTTATCAGCAGATGGGCAGTAACAGCCCGAGACTGAGAAGGCAGGTGATGCAAGCAGATAAGTCATTGAACAGAATCTCAATCTTCCTCTTTTGCTGTTTTGTTTTATGTCTCATTGTATTTTGA 903 0.4574 MSEVYERISNEIRFSSVSRYKPQHSGNERRFNALDFSSSVIGGSDRVADLSGIXFMAFEHYISQEWKSIPSSMTKETGNHNSCFDCNICFDFAIEPVVTLCGHLYCWPCIYKWLHVQSASLPSDEHPQCPVCRADICPTTLVPLYGRGQNPAPPEQDTKASREILIPPRPRAFGAQALMLASASSSSSQGGHHQHHPYHYPHHSHQHFSSPLYQRVEDASSQVLNLSTTLTPQGFHHPVAGMVYATVFGSPENLYAYPNSYQQMGSNSPRLRRQVMQADKSLNRISIFLFCCFVLCLIVF 300
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1254 300 ProSitePatterns Zinc finger RING-type signature. 101 110 IPR017907 -
Alju03g1254 300 SUPERFAMILY RING/U-box 85 139 - -
Alju03g1254 300 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 63 297 IPR045103 GO:0005783|GO:0006511|GO:0061630
Alju03g1254 300 SMART ring_2 86 132 IPR001841 -
Alju03g1254 300 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 147 IPR013083 -
Alju03g1254 300 ProSiteProfiles Zinc finger RING-type profile. 86 133 IPR001841 -
Alju03g1254 300 MobiDBLite consensus disorder prediction 185 206 - -
Alju03g1254 300 Pfam Zinc finger, C3HC4 type (RING finger) 86 132 IPR018957 GO:0046872
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Alju03g1254 Alju-ChrAlju03 41067313 41070593 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1254 61 286 C3H Transcription Factor Family AT4G27470 38.034 4.41e-41 141
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g1254 03 41067313 41070593 Alju03g1254 03 41067313 41070593 ECH