Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1253 ATGGCTGAAAGATTAGCGGAGCCGAAGAGGCTCGACAATAACACAGCCGTGGCGGCCACCATGGTCTCCGGCGGCCGACGGTGTGTGGCACCATTTCTGTTGAAGACGTATGATTTGGTGGAAGAAGGCGGAGCAGCCGAAGGCGAGGAAGAAGAAGAAGAAGAAGAAAGGAAGATATCAGTAATAGTATCATGGAATGAGGAAGGAGATGGTTTTGTAGTGTGGCGTCCTGCAGAATTCTCAGAACTCATATTGCCAAGATACTTCAAGCACAACAACTTCTCCAGCTTCATCCGCCAATTAAACACCTACGGATTCAAGAAAGTGTCATCAAAGAGATGGGAATTCAAGCAGGAGAAATTTCAGAGAGGTAACAAGAAGTTGCTGGCGGAGATAACGAGGAAGAAGTGTGAGCCAAGTGTTTTCCCTTCATACTTGAAGTCTTGTTCTGAAGAAAACGCAGCCATTGATGAAGAAACCAATAATCATAATCATAATCTTGATAATGAATTTTTGCTACAGCAGAACCAAGACCTGAAGAAGCAGAACCAGCACTTGCAATCACAACTCGCTCACTTCAAACAATTACAAACCAGGTTGTTGCATTGTGTCTCTCAATATATGGGCGCCTCCCCAGAATAA 642 0.447 MAERLAEPKRLDNNTAVAATMVSGGRRCVAPFLLKTYDLVEEGGAAEGEEEEEEEERKISVIVSWNEEGDGFVVWRPAEFSELILPRYFKHNNFSSFIRQLNTYGFKKVSSKRWEFKQEKFQRGNKKLLAEITRKKCEPSVFPSYLKSCSEENAAIDEETNNHNHNLDNEFLLQQNQDLKKQNQHLQSQLAHFKQLQTRLLHCVSQYMGASPE 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1253 213 Pfam HSF-type DNA-binding 32 135 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju03g1253 213 ProSitePatterns HSF-type DNA-binding domain signature. 85 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju03g1253 213 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 28 199 IPR027725 -
Alju03g1253 213 SMART hsfneu3 28 135 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju03g1253 213 FunFam Heat stress transcription factor A-6b 25 136 - -
Alju03g1253 213 Coils Coil 162 196 - -
Alju03g1253 213 Gene3D - 25 136 IPR036388 -
Alju03g1253 213 SUPERFAMILY "Winged helix" DNA-binding domain 56 135 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1253 Alju-ChrAlju03 41051491 41055099 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1253 14 212 HSF AT5G62020 34.211 3.97e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Alju03g1253 HSF_DNA-bind 1.3e-29 CL0123