Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1182 ATGGCGGACGAGGGGTTCGATTTCTCGGAACTGCTTGACGGAGATGCTGATGCTGATGATAAGTTGTGTATAGATCTTGACACCGTTTTGAATGTCCTTGATGAGGATTGTGATCCTTCGGAGAGTAGTCTGGAGGGTTTTTCGTTAAAAAATGTCTCACCTGGCGAATCCAGCAACCATGATAATTTTCAGCTTCAAAGTGGAAATTCTATTCTTTGCTGTGATAATGAAAATCAAGGACCTCCTTCACAGACTTGCTCATCCTCTCATGCTGTCCCTGATGGTTTTCAACAGCTGGATCGTCTAGATGGAAGTAACAAAATTTGCTACACAGAAAGGGAAGGTACTTTGGGATTTGAGATGCTTGCCCAATCTTCGGAACCTAGTGTCCCTGAGCCACATTTCAAAAATATATCAGTTTGTGGGGATAATTTGAATTTGAATCCTCTCTGGAAGGAAAAAAATGAGAGCCAGCTCAAGCATGTGGGAGATGATGTTAAATCTGAACATGCTTCATACAGTCCTATGATCGAGAATGGTGATGTAAGTTTTGAACAATATCGAGCTTTTGATGAGGATATGGGTGAAGGAGTTTCTGGGCAACTTGAAACTGATTCGTGTACATCTTTTGAAATGCCATTCATGGATGCTAATGGCGGTTCACATTTTGCAACATCAACCAATTCTACTATTTTCCAAGGCTCCAATGCTCGTGGTGATTCTCGTGACTACTTTTCATGCTTTCATGGTTACAAGGGCACAGATGATAGACTTCTAGCTTCTTATTTACCTAATGTTTTTGGCTCTCAATTTTGGCCAAATCAAGAAGTTCTTGATAATGTGAAGGGTGAAAATGTGGAATATGTGGCTGATGCCTCACATGTGAGTAGTAACATGCATTCCAGTTCTACTGGTGGGATTTCATTTCAAGATAATCAATTTATATCTGCAGATAGTGAATTTTCTTCATTTTTACATGGTGATGCTTCATACTTTCCATGCGAAGACCAAGTCGTTTGTGTCAAAGGCGGAAGAGATGAACCAATTGCACCTTACCAGAGCACTGTTTATGGAGATTACTCGGACTTTAATGGAGGCCAAGAGATGAATCAATTAAATGGAGGCCTAGAGATGAATCAGTTAAATGGAGGCCTGGAGATGAATCAGTTAAATAGTGCTTTTCCTTCCATGGGAAGTCATATTTTTAATTTGTTAGAGTGTGAGGATAAAGATGCTGATATATTATCCCACATGCATCATCATCAAGAGATTATTGATGGTACTAACTTCAAATTTCCAAGAGACACTCCTGATTTGAATAGACAAGCCTTAGACATATCTTTGCTGAATGCCCAAGCATCAATTAGCACTGAGAAGAAGTTTGGTTATGTTAAAAATGGAGGGGAGGAAAACATGATTCAATGTAGGAATTTTGATTACCACATCTCAAAAGCTGGCCCTGAATTGGTTCACAGAAGTTTTTTAGAGAAATCCCATGTTGAGGATGATGACTCTGATGTCTGTGTGATTGAAAGCATTAGTCATCCTGCACCGAAAAATGTATCAGCAGACCATCAGAATTCTCATACAATATCACATCACTCTGCATATGGTGATTCACAACCTTACATGTCACGGAGCACAAGGCTGAAGGCCTGTGATGAGCAAAATGTATTACGAGTTGCTCTACAAGATTTATCTCAGCCAAAGTCAGAAGCTTTACCCCCAGATGGATTGATGGCTGTTCCTCTATTAAGACATCAGAGAATTGCTTTGTCATGGATGGTTCAAAAGGAAACATCAAGTTTTTACTGCTCAGGGGGAATCCTTGCAGATGATCAGGGACTTGGAAAAACAGTGTCGACTATTTCTTTGATACTGAAGGAAAGACCTCCAAAACTAACAGCTTGCCACAATACACAAAAGGGTGAATTAGAAACTTTGAATCTGGAGGTCGATGATGATGTTCTTGCTGAGGGTGGTGGAGTGAAGGAAGACAAACCTAGTGTAAGTCCAATTGAAAGCAAGAACTTGGTGCAAACAAAGGGAAGGCCATCTGCAGGAACACTTATTGTTTGTCCCACTAGTGTGCTAAGGCAATGGGCTGAAGAGTTGAAAAACAAGGTAACCAGCAAAGCAAATCTCTCTGTGCTAGTGTACCATGGAAGCAATCGAACCAAAGATCCATATGTGCTGGCCAAGTATGATGTTGTTGTGACAACTTATTCAATTGTCAGCATGGAGGTACCTAAGCAGCCTCTGGTTGACAAAGATGAAGAGAAAGGAAATTCTGAAGTTCATGCTGGTCTACCGCCTAGTAAGAAAAGGAAATGCCCTCCTTCTAGTAGAAGTGGCAAGAAGAGATTAGACTCTGCCTTGCTTGAGGCTTCTGCCCGCCCTTTAGCTAAGGTGGCATGGTTTAGAGTTGTCTTGGATGAGGCCCAGAGTATAAAAAATTTCAGAACTCAAGTTGCAAGGGCCTGCTGGGGTCTTCGTGCGAAGCGAAGATGGTGCTTGTCTGGGACTCCCATCCAGAATGCTATTGATGATCTTTATAGTTATTTTAGATTTCTCAGATATGACCCTTATGCTGTATATAATACATTCCTTTCTTCTATTAAGATCCCAATAAACAGAAATCCAAACAAAGGGTATAGAAAGCTACAAGCTGTCTTAAAGACCATAATGTTACGCAGGACAAAAGGCACACTTCTTGATGGGGAACCTATTATTACACTGCCACCTAAACATGTGAAGCTGAAAATGGTGGATTTTTCAAGAGAGGAGCGTGATTTCTATTCCAGACTGGAAGCTGATTCTCGTGCACAATTTCAGGAATATGCTAATGCTGGAACTGTCAAGGAAAATTATGTCAACATTCTGTTGATGCTTTTACGCCTTAGACAAGCTTGTGATCATCCTCTGCTTGTTAAGCGCTACAATTCTAACACTTTATGGAGATCTTCAATTGATATTGCAAATAAGCTTCCCTGGGAAAAGCGAACATCACTTCTGAAATGTTTGGAGGCCTCCTTGTCTCTTTGTGGCATCTGTAATGATTCTCCTGAAGATGCAGTTGTTTCTGCTTGCGGTCATGTTTTTTGTAACCAGTGCATTTCTGAACAGCTAACTGGTGATGACAATCAGTGCCCTACTACAAATTGCAAAGCTCAATTGAATATGTCTTCAGTGTTTTCCAGTGCCACATTGAGCTGTTCTCTTTCTGATCAGGCTAGTAATAGTTTGGTTGGTTGCTCTGGTTCTGAAGTGGAGGGTTATGGGCCCTGTTCTCAGAGTCTGTCATCTGATTCTTCAAAAATTAAGGCTGCTCTTGAGGTATTGAACTCATTGTGTAAGCCACAGGTTAATGCATCAATAAATATTTCAATGCAGATTAATTCTGATGAACATAGTGACTGCCATGGGAATTCCTCTGATTGCAACAAGGTGAAATCCTTGAGGGATTTTCCTGAGAGCCAAAAAGTGTCGGATGGAAGTTCTAATGATTCGATTGTTGGAGAGAAAGCTATTGTATTTTCTCAGTGGACAAGGATGTTAGATTTGCTGGAAGCATGTCTTAAGAATTCTTCAATTCAGTATAGGAGGCTTGATGGCACAATGTCAGTTGTTGCTAGGGATAAAGCTGTTAAAGATTTTAATACTCTCCCGGAGGTAACAGTTATGATTATGTCTTTGAAAGCCGCCAGTCTTGGCCTCAACATGGTAGCTGCCTGCCATGTACTTTTACTTGATCTATGGTGGAATCCAACAACAGAAGATCAAGCAATTGATAGGGCGCATCGAATTGGGCAGACTCGGCCTGTAACTGTTTTACGGTTGACTGTGAGAGATACGGTTGAAGATCGTATTTTAGCACTACAGCAAAAGAAGCGGAAGATGGTTGCATCTGCGTTTGGAGAAGATGAAACTGGCGGTCGTCAAAGTCGCCTCACAGTGGATGATTTAAAATACTTGTTCATGATGTGA 3987 0.4093 MADEGFDFSELLDGDADADDKLCIDLDTVLNVLDEDCDPSESSLEGFSLKNVSPGESSNHDNFQLQSGNSILCCDNENQGPPSQTCSSSHAVPDGFQQLDRLDGSNKICYTEREGTLGFEMLAQSSEPSVPEPHFKNISVCGDNLNLNPLWKEKNESQLKHVGDDVKSEHASYSPMIENGDVSFEQYRAFDEDMGEGVSGQLETDSCTSFEMPFMDANGGSHFATSTNSTIFQGSNARGDSRDYFSCFHGYKGTDDRLLASYLPNVFGSQFWPNQEVLDNVKGENVEYVADASHVSSNMHSSSTGGISFQDNQFISADSEFSSFLHGDASYFPCEDQVVCVKGGRDEPIAPYQSTVYGDYSDFNGGQEMNQLNGGLEMNQLNGGLEMNQLNSAFPSMGSHIFNLLECEDKDADILSHMHHHQEIIDGTNFKFPRDTPDLNRQALDISLLNAQASISTEKKFGYVKNGGEENMIQCRNFDYHISKAGPELVHRSFLEKSHVEDDDSDVCVIESISHPAPKNVSADHQNSHTISHHSAYGDSQPYMSRSTRLKACDEQNVLRVALQDLSQPKSEALPPDGLMAVPLLRHQRIALSWMVQKETSSFYCSGGILADDQGLGKTVSTISLILKERPPKLTACHNTQKGELETLNLEVDDDVLAEGGGVKEDKPSVSPIESKNLVQTKGRPSAGTLIVCPTSVLRQWAEELKNKVTSKANLSVLVYHGSNRTKDPYVLAKYDVVVTTYSIVSMEVPKQPLVDKDEEKGNSEVHAGLPPSKKRKCPPSSRSGKKRLDSALLEASARPLAKVAWFRVVLDEAQSIKNFRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYNTFLSSIKIPINRNPNKGYRKLQAVLKTIMLRRTKGTLLDGEPIITLPPKHVKLKMVDFSREERDFYSRLEADSRAQFQEYANAGTVKENYVNILLMLLRLRQACDHPLLVKRYNSNTLWRSSIDIANKLPWEKRTSLLKCLEASLSLCGICNDSPEDAVVSACGHVFCNQCISEQLTGDDNQCPTTNCKAQLNMSSVFSSATLSCSLSDQASNSLVGCSGSEVEGYGPCSQSLSSDSSKIKAALEVLNSLCKPQVNASINISMQINSDEHSDCHGNSSDCNKVKSLRDFPESQKVSDGSSNDSIVGEKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVVARDKAVKDFNTLPEVTVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVASAFGEDETGGRQSRLTVDDLKYLFMM 1328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1182 1328 Gene3D - 914 1327 IPR027417 -
Alju03g1182 1328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1001 1066 IPR013083 -
Alju03g1182 1328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 569 899 IPR027417 -
Alju03g1182 1328 SMART ring_2 1015 1053 IPR001841 -
Alju03g1182 1328 Pfam SNF2-related domain 604 976 IPR000330 GO:0005524|GO:0140658
Alju03g1182 1328 SUPERFAMILY RING/U-box 1013 1058 - -
Alju03g1182 1328 Pfam Zinc finger, C3HC4 type (RING finger) 1015 1052 - -
Alju03g1182 1328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 907 1327 IPR027417 -
Alju03g1182 1328 ProSiteProfiles Zinc finger RING-type profile. 1015 1054 IPR001841 -
Alju03g1182 1328 Pfam Helicase conserved C-terminal domain 1172 1270 IPR001650 -
Alju03g1182 1328 Gene3D - 670 760 IPR038718 -
Alju03g1182 1328 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 495 1327 - -
Alju03g1182 1328 CDD SF2_C_SNF 1173 1280 - -
Alju03g1182 1328 MobiDBLite consensus disorder prediction 755 786 - -
Alju03g1182 1328 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1149 1323 IPR001650 -
Alju03g1182 1328 SMART ultradead3 580 878 IPR014001 -
Alju03g1182 1328 ProSitePatterns Zinc finger RING-type signature. 1030 1039 IPR017907 -
Alju03g1182 1328 Gene3D - 556 651 IPR038718 -
Alju03g1182 1328 Gene3D - 788 912 IPR038718 -
Alju03g1182 1328 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 599 861 IPR014001 -
Alju03g1182 1328 CDD DEXDc_SHPRH-like 584 899 - -
Alju03g1182 1328 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 671 758 - -
Alju03g1182 1328 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 782 911 - -
Alju03g1182 1328 SMART helicmild6 1187 1270 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1182 Alju-ChrAlju03 40155155 40163823 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1182 468 1327 RAD5 or RAD16-like Gene Family AT1G61140 59.347 0.0 964
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Alju03g1182 SNF2_N 4.4e-69 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g1182 03 40155155 40163823 Alju03g1182 03 40155155 40163823 CCT