Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju03g1119 | ATGGATCCTTCCCATCACTCCAATGAAGTGAATCAAATTCCAACAAATGACAATACCATTACCGAGCCAGACAATCATGATGATGACGAAACATTACGTAATGAATTGTTTTCCATTTTGGATATGCTTGCTTCATTTTCGGATTACGCCATAGAAGAAGAAGAAGACCACCTTCAAGGAGATGATAATGGTGGTGATAGTTTAGATTTTGGTGTTGGTGATGTACGTGGGTATATTGAGGAATTGATGAGGAACGAGCAGGAAATGATGAGGGCGCCGACGAGGATGAACAACCAAAATGGAGATGATCCGATGGGACCGATAATCAACAACCAAAATGGAGATGACCCGATGGCCGGGCCGGTTTCTGGAACTCCGGCAACTGAATCATCCATTGAAGCATTAGAGAAGGTGACTGTGGTTGAACAGAAAGAAGGAGGAGGGAGCACAATTATGGGTAAGTTTGAATGTTCTATTTGCTTTGAAGGTTCTTCAAATGATCCTGAAGCTTCTCGTATGCCTTGCTCCCATTTGTTTCACACAAAATGTATCATTTCCTGGCTTCATACTCGCAATACTTGTCCTCTTTGCCGATTTGAAATGCCTACTGGTGATGAAAAGTGA | 624 | 0.4231 | MDPSHHSNEVNQIPTNDNTITEPDNHDDDETLRNELFSILDMLASFSDYAIEEEEDHLQGDDNGGDSLDFGVGDVRGYIEELMRNEQEMMRAPTRMNNQNGDDPMGPIINNQNGDDPMAGPVSGTPATESSIEALEKVTVVEQKEGGGSTIMGKFECSICFEGSSNDPEASRMPCSHLFHTKCIISWLHTRNTCPLCRFEMPTGDEK | 207 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju03g1119 | 207 | SMART | ring_2 | 157 | 197 | IPR001841 | - | |
| Alju03g1119 | 207 | ProSiteProfiles | Zinc finger RING-type profile. | 157 | 198 | IPR001841 | - | |
| Alju03g1119 | 207 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Alju03g1119 | 207 | SUPERFAMILY | RING/U-box | 156 | 202 | - | - | |
| Alju03g1119 | 207 | Pfam | Ring finger domain | 156 | 198 | IPR001841 | - | |
| Alju03g1119 | 207 | SMART | ringv_2 | 156 | 198 | IPR011016 | GO:0008270 | |
| Alju03g1119 | 207 | CDD | RING-H2_PA-TM-RING | 156 | 198 | - | - | |
| Alju03g1119 | 207 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 117 | 204 | IPR013083 | - | |
| Alju03g1119 | 207 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
| Alju03g1119 | 207 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 50 | 202 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju03g1119 | Alju-ChrAlju03 | 39255753 | 39256376 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju03g1119 | 103 | 202 | C3H Transcription Factor Family | AT1G14200 | 36.792 | 6.65e-18 | 76.3 |