Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1118 ATGGATCCAGCCAATGAAGCTTATTCAACAAACGAGAATACCACTACTACTGATCACTCAGCCGATCATGCCAACTCAACATCTTTAGGTGATGACTTGTTTAGTATTATGGATATGCTAGCTTCATTTTTGAATATCACCAGTGAACTCGAACAACACCACCTTGAAGGAGTTAATAATGGTGGTGGTGCACATGTTGGTGCTGGATTTTGGGATGAATTTTTGGGGATCCAACGAAATAATGAACATGAAGGTGCTTATGATATTCCAGGGTTTATGGAAGAAATAGCGAGGACAGAAAATGAAATGACGATGATAATGACGAACAATCAAAATGAAGATCTGACGAGGCCGGTTTCTGCAACTCCGACAACTGAATCATCCATTGAAGGATTAGAGAAGGTGACTCTAGTTGAAGAAGAAGAAGAAGGAGAAGGCACAATGGGTAAGATTGAATGTTCTATTTGCTTTGAAGATTTTTCAAACGACCCTGAAGCTTCTATTATGCCTTGCTCCCATTTGTTTCACACAAAATGCATCATTTGCTGGCTCTATATTCATAATACTTGTCCTCTTTGCCGATTTGAAATGCCTACAGGTGATCAAAATTGA 612 0.3922 MDPANEAYSTNENTTTTDHSADHANSTSLGDDLFSIMDMLASFLNITSELEQHHLEGVNNGGGAHVGAGFWDEFLGIQRNNEHEGAYDIPGFMEEIARTENEMTMIMTNNQNEDLTRPVSATPTTESSIEGLEKVTLVEEEEEGEGTMGKIECSICFEDFSNDPEASIMPCSHLFHTKCIICWLYIHNTCPLCRFEMPTGDQN 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1118 203 ProSiteProfiles Zinc finger RING-type profile. 153 194 IPR001841 -
Alju03g1118 203 SMART ring_2 153 193 IPR001841 -
Alju03g1118 203 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 51 198 - -
Alju03g1118 203 CDD RING-H2_PA-TM-RING 152 194 - -
Alju03g1118 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 200 IPR013083 -
Alju03g1118 203 SUPERFAMILY RING/U-box 137 198 - -
Alju03g1118 203 Pfam Ring finger domain 152 194 IPR001841 -
Alju03g1118 203 SMART ringv_2 152 194 IPR011016 GO:0008270
Alju03g1118 203 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1118 Alju-ChrAlju03 39252800 39253411 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1118 122 198 C3H Transcription Factor Family AT1G14200 40.260 2.26e-17 74.7