Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1117 ATGGAAGTTGAACATTCATGTGAAGTATACCCAGCAGACACCAACACCTCTATCTCCGCCGATCATTTCATCTCATCTTACTCAAGTGAACAATACTACAAGATGGAGGTCGAATGCAAATCCTATCTTGTTTTGGATGGTATCGCTTTAGACCGTTTCACTATTTCCAATGAGTGTGGCTTCTCAAACATCCTTAAGCAAGACGTAGAGAAGTTCGTACATATGCTTCTTCCTTATTTTAATGTTCCTGTTCATTCTCGTCCTCGGACGGCTGCAAAAATCTTGGCATGTGCCCATCACATGGCGAATGTAACTCACAAGAACCACAAGATTATGGGCATGCGAGTTGTTTTAACAAATACTACTCAAGTTTATCACTATGAATATCGTCTTCGTAGGGATTTGATTGATCCAATGGACGAAGATGAAGATGGTCTGAGACCGATTCCGCCAAGCAAGTCAGCCGTAGAAGAGTTGGAAAGGGTGAAGGTGGAGGAACAAAAAGAAGAAGGGACTTTTATGATGGGAAAATATTGTAACTGCACAATTTGCTTGGAGGATTTTTCAGTTGATTCAGAAGCTATTCGCATGCCTTGCTTGCACTTATTTCACAGCAAATGCATCATAAATTGGTTGGAGAATCGCAATACTTGTCCTCTGTGTCGCTTTCAATTGCCTACGGGTGATGATCAAGGTGGACCAAGCTAG 708 0.4181 MEVEHSCEVYPADTNTSISADHFISSYSSEQYYKMEVECKSYLVLDGIALDRFTISNECGFSNILKQDVEKFVHMLLPYFNVPVHSRPRTAAKILACAHHMANVTHKNHKIMGMRVVLTNTTQVYHYEYRLRRDLIDPMDEDEDGLRPIPPSKSAVEELERVKVEEQKEEGTFMMGKYCNCTICLEDFSVDSEAIRMPCLHLFHSKCIINWLENRNTCPLCRFQLPTGDDQGGPS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1117 235 CDD RING-H2_PA-TM-RING 181 222 - -
Alju03g1117 235 Pfam Ring finger domain 180 222 IPR001841 -
Alju03g1117 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 228 IPR013083 -
Alju03g1117 235 ProSiteProfiles Zinc finger RING-type profile. 181 222 IPR001841 -
Alju03g1117 235 SMART ring_2 181 221 IPR001841 -
Alju03g1117 235 SUPERFAMILY RING/U-box 158 227 - -
Alju03g1117 235 FunFam E3 ubiquitin-protein ligase RNF181 139 228 - -
Alju03g1117 235 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 94 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1117 Alju-ChrAlju03 39222192 39222899 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1117 134 229 C3H Transcription Factor Family AT5G01980 42.268 2.54e-18 81.6