LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju03g1106	ATGGCAACTCACCTTCCCGACCACTTTAAGTGTCCGATTTCCCTAGAGATAATGTCCGACCCAGTTATTATTCCCTCGGGTCACACCTTTGACCGTTCTTCCATCCAACGGTGGCTCGACGCCGGTCACCGGGTTTGTCCGATTACCAAATTGCCCCTCCCTGATTATCCTTCCCTCATCCCCAACCATGCTCTCAGAAGCTTGATTTCCAACTATGCTCTCATTTCGCCTCTACAGCAGCAGCTTCCTCCCCAACCTGAAACCCTAATCTCCTTGCTCACTTCTCAGTCTTCACCCTTGGAATCTAAAATTGAATTACTAGGCCAACTCATCCGGCTTTCCCAGCGTGACTCGCTGTTTCGCCGGCGGTTGACTGAGTCAGGGGTTGTATCGGCGGTGCTAAACTGCGTTGACTCCGGTGATTCTGGTCTTCAGGAGAAAGCCCTCTCCCTCCTATTGAATCTAAGTCTTGACGATGATAACAAAGTGGGTTTGGCTGCGGAAGGTGTGATAGCTCGAGTTGTGGCTGTTCTGCTTGGTGGCTCACCGAATTGCAGAGCGATTGCGGCAACTATGCTGACCAGCTTGGCGGTTGTGGAAGTAAATAAAGCCACGATTGGTGCATACCCATGTGCCATTGAAACTCTGGTTTCGCTTCTTCGGAATGGTAAAGGGAGAGAGAAGAAGGAAGCTGCCACGGCGCTTTATGCAATCTGTTCATTTCCTGATAATCGAAGGAGAGCCGTAGAATGTGGGGCAGTTCCTGTTTTGCTTGGAAGTGCTGATTCTGGGCTTGAGAGGGCTGTTGAAGTTCTAGGTATTCTGGCCAAGTGTAAGGAAGGTAGGGAACAAATGAAAAGCTATCATGGATGCATACAGATTTTGGCTCGGGTTTTGAGGAATGGAAGCTCGAGGGGAATTCAATATGCACTGTTGGCACTGAACTCTCTTTGTTGTAGTAGTGAAAAAATGAGACTAGAGGCTGTAAAAGAAGGAGTTTTGGAGATTGGTCTTCAATTGCTGGATGATGATAGTGAGAAAGTAAGGAGGAACTCGTCCAATTTGATTCAGGTTCTACGTGGCAACCAGTGGACAAGTTGA	1101	0.4841	MATHLPDHFKCPISLEIMSDPVIIPSGHTFDRSSIQRWLDAGHRVCPITKLPLPDYPSLIPNHALRSLISNYALISPLQQQLPPQPETLISLLTSQSSPLESKIELLGQLIRLSQRDSLFRRRLTESGVVSAVLNCVDSGDSGLQEKALSLLLNLSLDDDNKVGLAAEGVIARVVAVLLGGSPNCRAIAATMLTSLAVVEVNKATIGAYPCAIETLVSLLRNGKGREKKEAATALYAICSFPDNRRRAVECGAVPVLLGSADSGLERAVEVLGILAKCKEGREQMKSYHGCIQILARVLRNGSSRGIQYALLALNSLCCSSEKMRLEAVKEGVLEIGLQLLDDDSEKVRRNSSNLIQVLRGNQWTS	366

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju03g1106	366	Gene3D	-	81	205	IPR011989	-
	Alju03g1106	366	Pfam	U-box domain	6	72	IPR003613	GO:0004842\|GO:0016567
	Alju03g1106	366	SMART	arm_5	278	319	IPR000225	GO:0005515
	Alju03g1106	366	SMART	arm_5	320	361	IPR000225	GO:0005515
	Alju03g1106	366	SMART	arm_5	158	198	IPR000225	GO:0005515
	Alju03g1106	366	SMART	arm_5	117	157	IPR000225	GO:0005515
	Alju03g1106	366	SMART	arm_5	202	240	IPR000225	GO:0005515
	Alju03g1106	366	SMART	arm_5	241	277	IPR000225	GO:0005515
	Alju03g1106	366	SUPERFAMILY	ARM repeat	87	359	IPR016024	-
	Alju03g1106	366	PANTHER	U BOX DOMAIN-CONTAINING	6	356	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju03g1106	Alju-ChrAlju03	39087899	39088999	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju03g1106	1	361	U-box Gene Family	AT4G21350	62.060	1.51e-154	437

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