Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1078 ATGGGTTCTCCGGAGAACCCCAATTGGGTCTTCGATTACGGTTATTTAGACGATATTCCCGTCCCTGGTGCTGACCTTCCTCCTCTTGACCCACCCGGTTTTGCTTGGCCCTCTCATTCCCTCGCTGCTCCTCCTCCTGATTTCAGTGTGGGGTTGGACGATACCTATGGGAATTCTGATGGTCTTAAGGAACCTGGATCAAGAAAACGCCTAAGGTCAGGATCTGGCAATTCATCTGGCTCCAAAGCATGTAGAGAGAAATTGAGGAGGGATCGACTGAATGACAGGTTGCTAGAATTGGGCTCTGTCCTTGATCCTGGCAGGCCTGCCAAAACAGACAAGGCTGTCATATTAAGCGATGCAGTTCGAGTGCTCTCTCAGCTACGAGAAGAGGCTCAGAAGCTTAGAGAGTCCAACGAGAATCTGCAGAAGAAAATAAACGAACTAAAGGCTGAGAAAAATGAGCTCCGCGGCGAGAAGCAGCGACTAAAATCAGAGAAAGATAACATTGAGCGGCAAGTTAAAGCCGTGAATTCACAGTCAGGCTTCCTGCCTCGCCCTCCCACCCTCACAGCAGCTCCATTTCCAGCACCAGGACAAGTTCTTGGGAGCAAGATGGTGTCATTCATCGGTTACCCAGGAGTTTCAATGTGGCAGTTCTTACCCCCTGCTTCTGTTGACACCTCACAGGACCATGTACTTCGTCCCCCAGTTGCCTAA 720 0.5028 MGSPENPNWVFDYGYLDDIPVPGADLPPLDPPGFAWPSHSLAAPPPDFSVGLDDTYGNSDGLKEPGSRKRLRSGSGNSSGSKACREKLRRDRLNDRLLELGSVLDPGRPAKTDKAVILSDAVRVLSQLREEAQKLRESNENLQKKINELKAEKNELRGEKQRLKSEKDNIERQVKAVNSQSGFLPRPPTLTAAPFPAPGQVLGSKMVSFIGYPGVSMWQFLPPASVDTSQDHVLRPPVA 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1078 239 Gene3D - 81 157 IPR036638 GO:0046983
Alju03g1078 239 SMART finulus 83 134 IPR011598 GO:0046983
Alju03g1078 239 MobiDBLite consensus disorder prediction 21 88 - -
Alju03g1078 239 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 148 IPR036638 GO:0046983
Alju03g1078 239 PANTHER BHLH TRANSCRIPTION FACTOR 6 239 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Alju03g1078 239 CDD bHLH_AtILR3_like 82 157 - -
Alju03g1078 239 Pfam Helix-loop-helix DNA-binding domain 81 128 IPR011598 GO:0046983
Alju03g1078 239 Coils Coil 118 180 - -
Alju03g1078 239 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 77 128 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1078 Alju-ChrAlju03 38720113 38722271 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1078 1 239 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 56.327 5.41e-91 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju03g1078 HLH 6.6e-09 No_clan