Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1057 ATGGAAAATCCTACCTTTCTTCATGAATGGAACTTGAACTCTGTGGATGATCCAAGCTTAGTGCCACTAGCTGCTGCTTTTGGAGACAGCTTACAACAAAATTCATTTTCTAACCCAACAACAACGTTGTTCAATCCCAAAACTTCCATGGAAACTTCACTACTTTCTGGCATTGAAAGGCCCCAGAAACAGACCAAACCAAACAGTACAATGGATCAGAACCAGACATTAGACACAGACTATGATTCTTGTTCCAATAATCTTCTTTCCTTTGTCAATTCAAGTTACATAAGCCAATTGGGGTACTTAAAGCCTTATTATAAGGAGCAGATACCATGTCCTGAAATCAATAGTACAATCGCTTGCTCAGACATGTTGGCCTCTCATGGATCCTTGGGAAATCAGAACTTTGTCTTCAATGCTACTAGCCAAGACCCCAGAAAGAATATTGGACCAAGTCCTAAACTTTCTCAACCTCAAGACCACATAATTGCTGAAAGAAAGCGGCGAGAGAAGCTCGCCCAGCGATTCATTGCTCTATCTGCACTTGTCCCAGGCCTTAAAAAGACGGACAAGGCTTCTGTTCTTGGGGATGCTATAAAGTATATGAAGCAATTGCAAGAGAGAGTGAGGGTCCTTGAAGAGGAACAGAGTAGAAGGAGCACTGTGGAATCTGTGGTGGTTGTGAAGAAAACTGTGTTATTAGCTGATGAAGGACAAGATTGTTCTTCAGACTCTGGTGATTTTGTGAAGGAGGAGCCATTACCAGAAATTGAAGCTAGATTTTGTGAGAGAAATGTCCTCATAAGAGTTCACTGTGAGAAAATAACAGGAGTGATAGAAAAAACGGTCAGTGAGATTGAGAAACTTCATCTGATAGTCACAAGTACCAGTGTTATGACGTTTGGCAGTTCTGCTCTTGATATAACCATCATTGCTCAGATGGATAAGGAATTTAGCTTGAAAGTGAAGGAGCTTCTAAGAAGCCTACGCTCAGCTTTTGAATCTTTCATGTGA 1017 0.411 MENPTFLHEWNLNSVDDPSLVPLAAAFGDSLQQNSFSNPTTTLFNPKTSMETSLLSGIERPQKQTKPNSTMDQNQTLDTDYDSCSNNLLSFVNSSYISQLGYLKPYYKEQIPCPEINSTIACSDMLASHGSLGNQNFVFNATSQDPRKNIGPSPKLSQPQDHIIAERKRREKLAQRFIALSALVPGLKKTDKASVLGDAIKYMKQLQERVRVLEEEQSRRSTVESVVVVKKTVLLADEGQDCSSDSGDFVKEEPLPEIEARFCERNVLIRVHCEKITGVIEKTVSEIEKLHLIVTSTSVMTFGSSALDITIIAQMDKEFSLKVKELLRSLRSAFESFM 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1057 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 206 IPR011598 GO:0046983
Alju03g1057 338 Pfam Helix-loop-helix DNA-binding domain 160 207 IPR011598 GO:0046983
Alju03g1057 338 Coils Coil 196 216 - -
Alju03g1057 338 SMART finulus 163 212 IPR011598 GO:0046983
Alju03g1057 338 Gene3D - 157 230 IPR036638 GO:0046983
Alju03g1057 338 CDD bHLH_AtNAI1_like 160 220 - -
Alju03g1057 338 PANTHER BHLH TRANSCRIPTION FACTOR 27 334 - -
Alju03g1057 338 MobiDBLite consensus disorder prediction 51 78 - -
Alju03g1057 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 219 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1057 Alju-ChrAlju03 38359118 38360980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1057 157 338 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 55.191 3.34e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju03g1057 HLH 4.1e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g1057 03 38359118 38360980 Alju03g1057 03 38359118 38360980 CCT
Alju03g1057 03 38359118 38360980 Alju03g1057 03 38359118 38360980 ECH