Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1041 ATGGGAAGAGGGAAGATAGCGATTAAAAGGATCGAGAATTCAACGAACAGGCAAGTAACCTTCTCAAAGAGAAGGAATGGATTGTTGAAAAAAGCGAGAGAGCTCTCAGTTCTTTGTGATGCTGAAGTTGGATTAATCGTCTTCTCCAGCACTGGCAGGCTTTATGACTTTGCAAGCACCAGCATGAAATCTGTTATAGAGCGATACAACAAGCTTAAAGAGGACCAACTCATGCTTATGAATCCTGCTTCTGAAGTCAAGCTTTGGCAGAGAGAGGTAGCAAACCTGAGGCAACAACTACAGAACTTGCAAGATTATCACAGGCAACTGATGGGCGAAGGACTTTCCGGTTTGGGAATTAAAGAACTGCAAAATCTGGAAAACCAATTGGAGATGAGTTTGAAGGGTGTCCGCATAAGGAAGGATCAAATGTTACATGATGAGATTAAAGAACTACACCAAAAGGGAAATCTGATTCATGAAGAAAATGTACAACTTCACAAAAAGCTAGACATCATCCAAAAAGAAAATGAAGAGCTGAGAAAGAAGGTTTACGGAGCACAAAGCATGAATGAAGAAAATGGGACATCCAATCCTTCACACACTATAAGCAACGGATATGATTTACATGCACCAATATGCCTCCAGCTAAGCCAGCCTCAGTTTCAATACAATGAACCACCAACCAAAACAATGAAACCGGGATTACAGCAGCCTAAGCCGAAGCCAGTTGACAATCAAGGTTGGTTGTTTGACAACAAGCTCTCAACAACCAGGTCCTGA 783 0.4176 MGRGKIAIKRIENSTNRQVTFSKRRNGLLKKARELSVLCDAEVGLIVFSSTGRLYDFASTSMKSVIERYNKLKEDQLMLMNPASEVKLWQREVANLRQQLQNLQDYHRQLMGEGLSGLGIKELQNLENQLEMSLKGVRIRKDQMLHDEIKELHQKGNLIHEENVQLHKKLDIIQKENEELRKKVYGAQSMNEENGTSNPSHTISNGYDLHAPICLQLSQPQFQYNEPPTKTMKPGLQQPKPKPVDNQGWLFDNKLSTTRS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1041 260 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju03g1041 260 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju03g1041 260 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Alju03g1041 260 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju03g1041 260 Coils Coil 120 140 - -
Alju03g1041 260 MobiDBLite consensus disorder prediction 223 260 - -
Alju03g1041 260 Coils Coil 163 183 - -
Alju03g1041 260 Coils Coil 86 113 - -
Alju03g1041 260 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Alju03g1041 260 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 191 - -
Alju03g1041 260 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Alju03g1041 260 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju03g1041 260 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju03g1041 260 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju03g1041 260 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Alju03g1041 260 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Alju03g1041 260 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Alju03g1041 260 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1041 Alju-ChrAlju03 38080090 38093040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1041 1 221 MADS-box Gene Family AT2G22630 57.207 7.06e-86 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju03g1041 K-box 2.1e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g1041 03 38080090 38093040 Alju03g1041 03 38080090 38093040 CCT