Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1038 ATGTTATACAGGCCTGTTCTTGCTGTGTGTTATCCTCTATGTGCTTCCGTCCAGGCAATTGAGAATGATAACAATTCATACACTCGGAATTTGATCTCTTATTGGATACTCCTCTCGAACTGGAAGAGGGTCCTTGTGAAGAAAGAAGACTTTCTAATGCTGGCTGAGAAATATATAATAGAGCATGGAACTGGAGCCTTAGAAAAACTCATTTGTCAGCATGTGAGGAAGGAAGCCTATTATCCTTTTCTTTTATCTGTGGGACACAGAGCGAAGTCCTCATTCAGAAACAAGAAAAGCAGATCGAACAACTACAGGTTTGCTGAGAAACCCATTGGAGAACAAGAGAAGATGATCAGTACTACTTCAAATGCTACATTAGAACAGAAGATCACAAACAGTCATCATCCCAAAATGGAACATGAGAATATTGATCAGCAGAACACCAAGGTGCAAGAATTGCAGAAGAACCTAGGAACATCAGTTGGAATGAATAATTTCAGATTCAGATGTGATATGTGTAATGCAAATTGCACTTGTGAAGCTGACTTGGCTTCTCACTTACAGGAAAGGTTTGCTGAGAAACCCATTGGAGAACAAGAGAAGATGATCAGTACTACTTCAAATGCTACATTAGAACAGAAGATCACAAACAGTCATCATCCCAAAATGGAACATGAGAATATTGATCAGCAGAACACCAAGGTGCAAGAATTGCAGAAGAACCTAGGAACATCAGTTGGAATGAATAATTTCAGATTCAGATGTGATATGTGTAATGCAAATTGCACTTGTGAAGCTGACTTGGCTTCTCACTTACAGGAAAGGTTTGCTGAGAAACCCATTGGAGAACAAGAGAAGATGATCAGTACTACTTCAAATGCTACATTAGAACAGAAGATCACAAACAGTCATCATCCCAAAATGGAACATGAGAATATTGATCAGCAGAACACCAAGGTGCAAGAATTGCAGAAGAACCTAGGAACATCAGTTGGAATGAATAATTTCAGATTCAGATGTGATATGTGTAATGCAAATTGCACTTGTGAAGCTGACTTGGCTTCTCACTTACAGGGTAATAAGCACTTGGCTCAACGTCAAATACTTAGTGGTCCTATACTCCTATCTAGTAAATGA 1140 0.3904 MLYRPVLAVCYPLCASVQAIENDNNSYTRNLISYWILLSNWKRVLVKKEDFLMLAEKYIIEHGTGALEKLICQHVRKEAYYPFLLSVGHRAKSSFRNKKSRSNNYRFAEKPIGEQEKMISTTSNATLEQKITNSHHPKMEHENIDQQNTKVQELQKNLGTSVGMNNFRFRCDMCNANCTCEADLASHLQERFAEKPIGEQEKMISTTSNATLEQKITNSHHPKMEHENIDQQNTKVQELQKNLGTSVGMNNFRFRCDMCNANCTCEADLASHLQERFAEKPIGEQEKMISTTSNATLEQKITNSHHPKMEHENIDQQNTKVQELQKNLGTSVGMNNFRFRCDMCNANCTCEADLASHLQGNKHLAQRQILSGPILLSSK 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1038 379 Pfam Zinc-finger of C2H2 type 339 363 - -
Alju03g1038 379 Pfam Zinc-finger of C2H2 type 169 189 - -
Alju03g1038 379 Pfam Zinc-finger of C2H2 type 254 274 - -
Alju03g1038 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 339 368 IPR013087 -
Alju03g1038 379 SMART c2h2final6 169 189 IPR013087 -
Alju03g1038 379 SMART c2h2final6 339 363 IPR013087 -
Alju03g1038 379 SMART c2h2final6 254 274 IPR013087 -
Alju03g1038 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 169 196 IPR013087 -
Alju03g1038 379 PANTHER OS06G0651300 PROTEIN-RELATED 215 368 - -
Alju03g1038 379 Gene3D Classic Zinc Finger 312 368 - -
Alju03g1038 379 SUPERFAMILY beta-beta-alpha zinc fingers 334 369 IPR036236 -
Alju03g1038 379 ProSitePatterns Zinc finger C2H2 type domain signature. 341 363 IPR013087 -
Alju03g1038 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 254 281 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1038 Alju-ChrAlju03 38004094 38011896 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1038 166 363 C2H2 Transcription Factor Family AT2G19380 26.961 5.74e-13 68.6