Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1007 ATGACTGAGCTAGAAGCTTCTCGCTCCGACAAGAAGAAGAAGAAGCACCGTAGCAAAGACGACGCCGCCGACGTCCAGTATTCAGACTTCCTGATCAAACCCCAGAGCTACACTCCCACCATTGACACTTCTCAATGGCCGATTCTCCTCAAGAACTACGACCGCCTCAATGTACGAACCGGACACTACACTCCTATTCCCTCCGGTTACTCTCCTCTCAAGCGACCTCTTCCCGAGTACATCAAGTACGGTATCATGAATCTCGATAAACCCGCTAACCCCTCTTCCCACGAGGTCGTTGCTTGGATTAAACGGATCCTCCGGGTCGAGAAAACGGGTCACAGTGGTACTCTGGATCCTAAGGTCACTGGAAACCTCATAGTTTGCATCGATAGAGCCACGCGTTTGGTGAAGTCGCAGCAGGGCGCTGGGAAAGAGTACGTTTGTGTCGCACGATTGCACTCTGCAGTGCCTGATGTCGCGAAGGTGGCCCGTGCGCTTGAGACGCTTACCGGAGCTGTGTTTCAGCGGCCGCCCTTGATTTCTGCGGTGAAGAGGCAGCTTAGGATCAGGACAATATACGAAAGTAAGCTTCTTGAGTATGATCCTGATAAACATTTGGTTGTGTTTTGGATTTCCTGTGAGGCAGGTACGTATGTGAGGACACTCTGTGTCCATCTGGGTTTGATTCTTGGTGTGGGAGGCCATATGCAGGAGCTTAGAAGGGTGCGTTCAGGTATTTTAGGTGAGAAAGATAATATGGTTTCTATGCATGATGTGTTGGATGCTCAATGGGTTTATGATAACTATAGAGATGAGAGTTATTTGAGAAGGGTTATTATGCCTTTAGAAGTATTATTAACGAGTTATAAGAGATTAGTTATTAAGGATTCTGCTGTTAATGCTATTTGTTATGGAGCAAAGCTGATGATTCCTGGGTTACTGAGATTTGAGAATGATATTGAGGTAGGGGAGGAAGTAGTGCTAATGACTACAAAAGGTGAAGCAATTGCTTTGGGAATTGCAGAGATGACAACTGCTGTAGTGGCTACTTGTGATCATGGTGTGGTAGCTAAGATCAAAAGAGTGGTCATGGATAGAGATACCTATCCGAGGAAATGGGGTCTAGGACCAAGAGCGGCCATGAAGAAGAAGTTGATTGCAGAAGGGAAGCTAGATAAGCGTGGGAAGCCAAATGAGAATACTCCTCAAGAGTGGCTGAGGAATGTAGTTTTGCCAACTGGTGGGGATTCTGTCATTGCTGGTATGCACGCTTCAGCTGAACCAGATGCTGGAAAGAAGGATAAAGTTAAGAGTAAGGAGGATGGGCAAGAGCGTAAAAGAAAACATGTTGAAAGTGATGCTGCTGCTCCAGTGCCCTCTAAGAAGGCCAAAACTGAAGAAGTTGAAGAAGCTGAAAAGGAAGTAGTGAAGATCAAGAAGATTAAAGAGGATGTAGTGGAGGTCGAAGTTGATAAGAAGGAGAAGAAGAAAAAGAAGAAGGATAAGGATGCTGATGAAGCAGAGGCTGGTTCACCAGATGTGGAGAAGTCTGAGAAGAAGAAAAAGAAAAACAAAGAAAAGACAGAAGTAGCTTCACCTGATGCGGAGAAGTCAGAGAAGAAGAAAAAGAAGAAGGAAAAAGAAGCTGAAAAGATTGCTACTGAGGTCAATGGGAAGGCTGATGACGATAAGGATAAAAGTGAGAAAAAGAAGAAGAAGAAGCATAAGAAGAAAAGTGAAGATGCAGAGGAATAA 1758 0.4516 MTELEASRSDKKKKKHRSKDDAADVQYSDFLIKPQSYTPTIDTSQWPILLKNYDRLNVRTGHYTPIPSGYSPLKRPLPEYIKYGIMNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVSMHDVLDAQWVYDNYRDESYLRRVIMPLEVLLTSYKRLVIKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVVATCDHGVVAKIKRVVMDRDTYPRKWGLGPRAAMKKKLIAEGKLDKRGKPNENTPQEWLRNVVLPTGGDSVIAGMHASAEPDAGKKDKVKSKEDGQERKRKHVESDAAAPVPSKKAKTEEVEEAEKEVVKIKKIKEDVVEVEVDKKEKKKKKKDKDADEAEAGSPDVEKSEKKKKKNKEKTEVASPDAEKSEKKKKKKEKEAEKIATEVNGKADDDKDKSEKKKKKKHKKKSEDAEE 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1007 585 Gene3D Pseudouridine synthase 76 282 - -
Alju03g1007 585 Coils Coil 536 556 - -
Alju03g1007 585 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 7 572 IPR004802 GO:0006396
Alju03g1007 585 SUPERFAMILY PUA domain-like 290 371 IPR015947 -
Alju03g1007 585 SMART DKCLD_2 42 100 IPR012960 -
Alju03g1007 585 MobiDBLite consensus disorder prediction 1 22 - -
Alju03g1007 585 Coils Coil 462 511 - -
Alju03g1007 585 SMART pua_5 291 365 IPR002478 GO:0003723
Alju03g1007 585 Pfam PUA domain 291 363 IPR002478 GO:0003723
Alju03g1007 585 MobiDBLite consensus disorder prediction 388 407 - -
Alju03g1007 585 Gene3D PUA domain 43 374 IPR036974 GO:0003723
Alju03g1007 585 CDD PseudoU_synth_hDyskerin 82 264 - -
Alju03g1007 585 Pfam DKCLD (NUC011) domain 43 100 IPR012960 -
Alju03g1007 585 Pfam tRNA pseudouridylate synthase B C-terminal domain 221 287 IPR032819 -
Alju03g1007 585 MobiDBLite consensus disorder prediction 428 569 - -
Alju03g1007 585 CDD PUA_Cbf5 289 363 - -
Alju03g1007 585 FunFam H/ACA ribonucleoprotein complex subunit CBF5 76 282 - -
Alju03g1007 585 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 50 375 IPR004802 GO:0006396
Alju03g1007 585 NCBIfam uncharacterized domain 2 286 362 IPR004521 GO:0003723
Alju03g1007 585 MobiDBLite consensus disorder prediction 417 585 - -
Alju03g1007 585 Pfam TruB family pseudouridylate synthase (N terminal domain) 104 220 IPR002501 GO:0006396
Alju03g1007 585 ProSiteProfiles PUA domain profile. 290 365 - -
Alju03g1007 585 SUPERFAMILY Pseudouridine synthase 43 288 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1007 Alju-ChrAlju03 37655912 37657669 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1007 1 466 NAC Transcription Factor Family AT3G57150 81.585 0.0 753