Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g0910 ATGTCTCACTTTGGACGGTCGGGTCCTCCAGACATCACTGACACCTATTCGCTTCTTGTGCTCAACATCACATTCCGTACAACAGCTGATGATCTGTTTCCCCTGTTCGATAAGTATGGCAAGGTCGTAGACATCTTTATTCCAAGAGATCGAAGGACTGGTGAATCAAGGGGTTTTGCATTTGTGCGTTATAAGTACGCTGATGAGGCACAAAAGGCTGTGGATAGGCTGGACGGAAGAGTGGTTGATGGCCGGGAGATAACTGTTCAGTTTGCAAAATATGGGCCTAATGCAGAGAGGATTCACAAAGGACGGATTATTGAAACATCCCCCAAGTCTAGCTACAGGTCCAGGAGTCGCAGTCCCAGGAGAAGGGACAGGGATTATAGGAAAAGGAGTCGCAGCAGGAGTTATGATAGGAATGAAAGGGATAGGCATCGTGGAAGAGACAGAGATTATCGTCGCAGAAGTAGGAGCCGTAGTGCAAGTCCTGATTACCATAAGAGTCGTGGAAGGGATCGCTATGATGATGATCGTCGGAGCAGAAGCCGAAGCCGATCTGTGGATAGTCCCTCCCCTGTACGACGCAGTCCTAGTCCTCGAAGGAGTCCTAGTCCTCAAAGGAGTGCTTCCCCTCAAAGAAGTATTTCCCCAAGGAGGAGCCCAAGGGGTGAAAGCCCTGAGAGCCGTAGTCGTGATAGACGATCACCTACACCTCGCAGTGTTTCACCTTGTGGTCAACCCAAGGATTCAAGAAGCCCATCCCCACGAAATTCTAATGGAGATGAATGA 792 0.4949 MSHFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYGPNAERIHKGRIIETSPKSSYRSRSRSPRRRDRDYRKRSRSRSYDRNERDRHRGRDRDYRRRSRSRSASPDYHKSRGRDRYDDDRRSRSRSRSVDSPSPVRRSPSPRRSPSPQRSASPQRSISPRRSPRGESPESRSRDRRSPTPRSVSPCGQPKDSRSPSPRNSNGDE 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g0910 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Alju03g0910 263 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 248 - -
Alju03g0910 263 MobiDBLite consensus disorder prediction 117 131 - -
Alju03g0910 263 Gene3D - 4 104 IPR012677 -
Alju03g0910 263 MobiDBLite consensus disorder prediction 221 237 - -
Alju03g0910 263 SMART rrm1_1 17 90 IPR000504 GO:0003723
Alju03g0910 263 SUPERFAMILY RNA-binding domain, RBD 9 101 IPR035979 GO:0003676
Alju03g0910 263 MobiDBLite consensus disorder prediction 187 220 - -
Alju03g0910 263 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Alju03g0910 263 MobiDBLite consensus disorder prediction 102 263 - -
Alju03g0910 263 SMART rrm2_1 17 90 IPR003954 GO:0003676
Alju03g0910 263 MobiDBLite consensus disorder prediction 238 263 - -
Alju03g0910 263 MobiDBLite consensus disorder prediction 132 186 - -
Alju03g0910 263 CDD RRM_SRSF2_SRSF8 18 90 - -
Alju03g0910 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g0910 Alju-ChrAlju03 36039080 36042433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g0910 14 92 Eukaryotic Initiation Factors Gene Family AT3G11400 35.443 7.40e-10 56.6