Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g0888 ATGATAGCTGAGGAGAAACTTGCTCTGTTTCAAAGCCACTGGTGGAAGGGCTACAACTTTTCCGAGGACCCTTGTGGCTGGGATGACATATCTTGCAACGATTTCGGAAGCGTTATTTCCATATGGAGATATGATGAACGCAATTCAAAGATAGCATATCTCAATTTCACTGCGTTTCCCAATCTTGAAGAATTGTATCTTATCGGAACGGGATTGATTGGAGTGCTTTACGTCTCCCTAGATCGGCTAAGTGGAAACGTGCCTTACATTGAGTACCCTATACTTTTGTATGGTACCATTCCAAGTCAAATTGGAGCTTTTCATAGTCTCACCAATTTGGACTTATCTGATAACAATCTTAGTGGTACCATTCCAAGTCAAATTGGAGCTCTTCATAATCTCACCAATTTGTACTTATCTTATAACAATCTTAGTGGTACCATTCCAACTCAAATTGGAGCTCTTCATAATCTCACCAATTTGTACTTATCCTATAACAATCTTAGTGGTACCATTCCAACCCAAATTGGAGCTCTTCATTATCTCATCAATTTGGACTTATCCTATAACAATCTTAGTGGTACCATTCCAAGACAAATTGAAACTCTTCATAATCTACTCTATGTGGACTTGTCTCATAACAATCTTATTGGTACCATTCCAACTCAAATTGGAGCTCTTCATAATCTCACCAATTTGTACTTATCTTATAACAATCTTAGTGGTACCATTCCAACTCAAATTGGAGCTCTTCATAATCTCACCAATTTGGACTTATCCTATAACAATCTTAGTGGTACCATTCCAACTCAAATTGGAGCTCTTCATTATCTCATCAATTTGGACTTATCCTATAACAATCTTAGTGGTACCATTCCAAGACAAATTGAAACTCTTCATAATCTACTCTATGTGGACTTGTCTCATAACAATCTTATTGGTACCATTCCAACTCAAATTGGAGCTCTTCATAATCTCACCAATTTGTACTTATCTTATAACAATCTTAGTGGTACCATTCCAACTCAAATTGGAGCTCTTCATAATCTCACCAATTTGGACTTATCCTATAACAATCTTAGTGGTACCATTCCAACTCAAATTGGAGCTCTTCATTATCTCATCAATTTGGACTTATCCTATAACAATCTTAGTGGTACCATTCCAAGACAAATTGAAACTCTTCATAATCTACTCTATGTGGACTTGTCTCATAACAATCTTATTGGTACCATTCCAACTCAAATTGGAGCTCTTCATAATCTCACCAATTTGGACTTATCCTATAACAATCTTAGTGGTACCATTCCAACTCAAATTGGAGCTCTTCATAATCTCACCAATTTGGACTTATCCTATAACAATCTTAGTGGTACCATTCCAACTCAAATTGGAGCTCTTCTTTATCTCATCAATTTGGACTTATCCTATAACAATCTTAGTGGTACCATTCTAAGACAAATTGAAACTCTTCATAATCTACTCTATGTGGACTTGTCTCATAACAATCTTATTGGTACCATTCCAACTCAAATTGGAGCTCTTTATAATCTCAGCAATTTGGACTTATCCTATAACAATCTTAGTGAGGAGAAGCACGCACTTCTTGAGAGCAAATGGTGGAACATCAGTGAAAATGGATCGAACTCCCATTGTGAGTGGCATGGCATAAGGTGCAATATCTTTGGAAGAGTTATTTCAATTAACCAACCAAAAATCCATTCACAACGACCATGGCTAGCAGATCTTAACCTCACTGCATTTGCCAAACTAAAAGAGTTGGTACTTTCTAGAATGGGTTTGATAGGTACAATTCCAAATGAGATAGGAGCTCTTCAAAGTCTCTCCAATCTAGACTTGTCTTATAACAATCTTATTGGTACAATTCCAAATGAGATAGGAGCTCTTCAAAATCTCGCCAATATAGACTTGTCTTATAACAATCTTATTGGTGATATCCCATCGTCAATTTCCAATTTGAAAAATTTAGAAGACTTTGATGTTTCTCAAAATCAACTAAGTGGTGGCATGCCTCGACTGCTTGGAAATTTCTTAAATTCTATTAATCTAAATATCTCCCAAAATAATCTGAGTGGAAAAGTGCCCTACATTATCAACGATCATTTTCAATTTCATGGTGACTTTAGTCACAACAAATTCAACGGAATATTACCATCTAGGTTATGCAGTGTTCCATCATTGTGTGGCATTAACTTGAGCTACAATGAAATTTCTTATAGTATATCTCCAGATCTTTTTAGGATGCAGTACATCAACTTAGATGGTAATACAAAATTACTTGGTCTAGAGAAGACACAGGATCCTACTAAAGGTTCAAAGTCTTTGTTGAAAATCTTCATTCCTTCAACAATTTTTCTTGTCATCGTATTTGCAGTGGGTTTCATCTTATTTGATTCTTTCAAAAAGAAAAAGAAATCCATAGCTGAGACAAGAGAAATGAAAAATGGGGATTTGTTTTCCATATGGAATTATGATGGAAAAATTGCATATGAAGACATCATTGGAGCAACAGAGTGCTTTGACATCAAATATTGTATTGGAACTGGTGCCTATGGAAGCGTTTACAGAGCACAACTTCCTAATGGTAAAATTGTAGCATTGAAAAAACTTCATAGAAGAGAATATGGAAACACATCTTTTACTAAGAGCTTTCACAATGAAGTGAAGATGTTAAATGAAATTCGACATCGTAATATTATAAAGCTCCATGGATTTTGTTTGCATAATCAATGCATGTTTCTCATATATGAATACATGGAAGGAGGAAGCCTTTTTTATGTCTTGAATAATGATGATGAGGCTAAAGAGTTGGATTGGAGTATGAGGGTGAATACCATTAAAGGAATAGCAAATGCTTTGTTCTACATGCATCATGATTGTGCTCCTCCAATTATCCATCGAGACGTAACAAGTAATAATGTATTGTTGAACTCAAAGATGGAGGCTTTTCTATCTGACTTTGGCACAGCTAGAATCCTTGATCCAGATTCATCTAATCAAACTCTTCTAGTTGGTACTTATGGTTATGTTGCTCCAGAACTTGCATACACCTTAGTTGTGACTGAAAAATGTGACGTTTATAGTTTTGGAGTGTTGACATTAGAAACATTCATGGGAAGACATCCTGGAGAGTTGATATTGTCATTTTCAAAAACCTGTAGCGAAAGCATTTTGCTGATAGATGTCTTAGACCCACGTCTCCCACTGCCATCACGGAAAGATGCACAAGATGTGACATTTTTGGTCAAGATAGCATTAGCATGCTTGAATCCATCTCCCAAATCTCGACCATCAATGAAACAAGTGTCTCAAGGGCTTTTATCCTCCAATCAGCCATTAGCCATTCCTTTCAATAACATCTCACTCCAGCATTTAATGAATCAAGATATGCAAATAATCTAG 3423 0.3599 MIAEEKLALFQSHWWKGYNFSEDPCGWDDISCNDFGSVISIWRYDERNSKIAYLNFTAFPNLEELYLIGTGLIGVLYVSLDRLSGNVPYIEYPILLYGTIPSQIGAFHSLTNLDLSDNNLSGTIPSQIGALHNLTNLYLSYNNLSGTIPTQIGALHNLTNLYLSYNNLSGTIPTQIGALHYLINLDLSYNNLSGTIPRQIETLHNLLYVDLSHNNLIGTIPTQIGALHNLTNLYLSYNNLSGTIPTQIGALHNLTNLDLSYNNLSGTIPTQIGALHYLINLDLSYNNLSGTIPRQIETLHNLLYVDLSHNNLIGTIPTQIGALHNLTNLYLSYNNLSGTIPTQIGALHNLTNLDLSYNNLSGTIPTQIGALHYLINLDLSYNNLSGTIPRQIETLHNLLYVDLSHNNLIGTIPTQIGALHNLTNLDLSYNNLSGTIPTQIGALHNLTNLDLSYNNLSGTIPTQIGALLYLINLDLSYNNLSGTILRQIETLHNLLYVDLSHNNLIGTIPTQIGALYNLSNLDLSYNNLSEEKHALLESKWWNISENGSNSHCEWHGIRCNIFGRVISINQPKIHSQRPWLADLNLTAFAKLKELVLSRMGLIGTIPNEIGALQSLSNLDLSYNNLIGTIPNEIGALQNLANIDLSYNNLIGDIPSSISNLKNLEDFDVSQNQLSGGMPRLLGNFLNSINLNISQNNLSGKVPYIINDHFQFHGDFSHNKFNGILPSRLCSVPSLCGINLSYNEISYSISPDLFRMQYINLDGNTKLLGLEKTQDPTKGSKSLLKIFIPSTIFLVIVFAVGFILFDSFKKKKKSIAETREMKNGDLFSIWNYDGKIAYEDIIGATECFDIKYCIGTGAYGSVYRAQLPNGKIVALKKLHRREYGNTSFTKSFHNEVKMLNEIRHRNIIKLHGFCLHNQCMFLIYEYMEGGSLFYVLNNDDEAKELDWSMRVNTIKGIANALFYMHHDCAPPIIHRDVTSNNVLLNSKMEAFLSDFGTARILDPDSSNQTLLVGTYGYVAPELAYTLVVTEKCDVYSFGVLTLETFMGRHPGELILSFSKTCSESILLIDVLDPRLPLPSRKDAQDVTFLVKIALACLNPSPKSRPSMKQVSQGLLSSNQPLAIPFNNISLQHLMNQDMQII 1140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g0888 1140 PRINTS Leucine-rich repeat signature 110 123 - -
Alju03g0888 1140 PRINTS Leucine-rich repeat signature 612 625 - -
Alju03g0888 1140 Gene3D Ribonuclease Inhibitor 197 292 IPR032675 -
Alju03g0888 1140 Gene3D Phosphorylase Kinase; domain 1 807 925 - -
Alju03g0888 1140 Pfam Protein kinase domain 851 1111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju03g0888 1140 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 56 319 - -
Alju03g0888 1140 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 584 1113 - -
Alju03g0888 1140 ProSiteProfiles Protein kinase domain profile. 847 1121 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju03g0888 1140 SUPERFAMILY Protein kinase-like (PK-like) 829 1111 IPR011009 -
Alju03g0888 1140 SUPERFAMILY L domain-like 19 221 - -
Alju03g0888 1140 ProSitePatterns Tyrosine protein kinases specific active-site signature. 971 983 IPR008266 GO:0004672|GO:0006468
Alju03g0888 1140 ProSitePatterns Protein kinases ATP-binding region signature. 853 875 IPR017441 GO:0005524
Alju03g0888 1140 SUPERFAMILY L domain-like 395 550 - -
Alju03g0888 1140 SUPERFAMILY L domain-like 548 768 - -
Alju03g0888 1140 Gene3D Ribonuclease Inhibitor 293 534 IPR032675 -
Alju03g0888 1140 FunFam Leucine-rich repeat receptor protein kinase MSP1 809 925 - -
Alju03g0888 1140 Gene3D Ribonuclease Inhibitor 4 196 IPR032675 -
Alju03g0888 1140 Gene3D Ribonuclease Inhibitor 535 773 IPR032675 -
Alju03g0888 1140 FunFam Nuclear pore complex protein NUP107 533 679 - -
Alju03g0888 1140 SUPERFAMILY L domain-like 158 433 - -
Alju03g0888 1140 SMART LRR_typ_2 347 371 IPR003591 -
Alju03g0888 1140 SMART LRR_typ_2 395 419 IPR003591 -
Alju03g0888 1140 SMART LRR_typ_2 515 538 IPR003591 -
Alju03g0888 1140 SMART LRR_typ_2 443 467 IPR003591 -
Alju03g0888 1140 SMART LRR_typ_2 107 131 IPR003591 -
Alju03g0888 1140 SMART LRR_typ_2 660 683 IPR003591 -
Alju03g0888 1140 SMART LRR_typ_2 203 227 IPR003591 -
Alju03g0888 1140 SMART LRR_typ_2 155 179 IPR003591 -
Alju03g0888 1140 SMART LRR_typ_2 612 636 IPR003591 -
Alju03g0888 1140 SMART LRR_typ_2 251 275 IPR003591 -
Alju03g0888 1140 SMART LRR_typ_2 491 514 IPR003591 -
Alju03g0888 1140 SMART LRR_typ_2 731 755 IPR003591 -
Alju03g0888 1140 SMART LRR_typ_2 299 323 IPR003591 -
Alju03g0888 1140 FunFam MDIS1-interacting receptor like kinase 2 926 1119 - -
Alju03g0888 1140 FunFam Leucine-rich repeat receptor protein kinase EMS1 439 532 - -
Alju03g0888 1140 SMART LRR_sd22_2 419 445 - -
Alju03g0888 1140 SMART LRR_sd22_2 155 187 - -
Alju03g0888 1140 SMART LRR_sd22_2 347 379 - -
Alju03g0888 1140 SMART LRR_sd22_2 515 545 - -
Alju03g0888 1140 SMART LRR_sd22_2 131 146 - -
Alju03g0888 1140 SMART LRR_sd22_2 323 338 - -
Alju03g0888 1140 SMART LRR_sd22_2 251 283 - -
Alju03g0888 1140 SMART LRR_sd22_2 227 242 - -
Alju03g0888 1140 SMART LRR_sd22_2 107 122 - -
Alju03g0888 1140 SMART LRR_sd22_2 636 662 - -
Alju03g0888 1140 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 341 438 - -
Alju03g0888 1140 Pfam Leucine rich repeat 253 312 IPR001611 GO:0005515
Alju03g0888 1140 Pfam Leucine rich repeat 183 240 IPR001611 GO:0005515
Alju03g0888 1140 Pfam Leucine rich repeat 109 168 IPR001611 GO:0005515
Alju03g0888 1140 Pfam Leucine rich repeat 349 408 IPR001611 GO:0005515
Alju03g0888 1140 Gene3D Transferase(Phosphotransferase) domain 1 926 1122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g0888 Alju-ChrAlju03 35646608 35661409 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g0888 15 1019 Receptor kinase-like Gene Family AT4G08850 35.538 3.58e-169 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Alju03g0888 Pkinase 6.5e-45 CL0016