Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g0880 ATGAGACATATGGACAGAATGATTTCGTCTTTCATGGGTGCTTTACTTCTTTGTGCAATCTTAGTGTTTAATTTGGTGCTGAATGCTTCTGGTAATGCCGAAGGTGATGCCCTGAATGCATTTAGGACCAGCGTAGCTGATCCAAACAATGTTCTTCAAAGCTGGGATGCTACCCTTGTCAATCCTTGCACATGGTTTCATGTTACATGCAATAGTGAAAATAGCGTGAACCGTGTTGATCTTGGAAATGCCAACCTTTCGGGTCAACTAGTTGCACAGCTTGGTCTACTCCCAAATTTGCAGTACTTGGAGCTTTATAGCAATAATATAACTGGAAAAATCCCAGATGAATTTGGAAATTTGACAAATTTGGTGAGCTTGGATCTGTACGCCAATAATATATCTGGTCGCATACCTGAAACATTGGGCAAGCTTCAAAAACTACGTTTTCTGCGTCTCAACAATAACTTCTTGAATGGAGCCATTCCCATGACCTTGACTACTGTCAATTCACTGCAAGTCCTTGATCTTTCAACAAACAAGCTACAAGGAGACATCCCAACCAGTGGTTCATTTCAATCATTTACTGAACTCAGTTTTGAAAAAAATCCTGATTTGAAACCACTAAACATTACACCTCGACCAATTTCACCAACGCCGCCGCCATCTCGTTCAGGCCGTAGTACTACTGGAGCTATTGCTGGAGGAGTTGCTGCTGCTGCTGCTCTAATGTTTGCAGCCCCTGCAATTGCTCTTGCGTATTGCCGGAAGAGGAGACCACAAGATTATTTCTTTGATGTTCCTGCTGAGGAGGACCCTGAAGTTCACCTTGGTCAGCTTAAAAAGTTTCCCCTGCGTGAGCTGCAAGTTGCAACGGACAGCTTTAGTAACAAAAACATTCTGGGAAGAGGTGGATTTGGTAAGGTTTACAAAGGACGGTTAGCTGATGGGTCTCTAGTTGCAGTGAAAAGACTTAAAGAGGAACGCACTCAGGGTGGGGAGCTGCAATTTCAAACAGAAGTAGAAATGATCAGCTTGGCTGTCCACCGTAATTTGCTGCGGCTGCGTGGCTTTTGCATGACACCGACTGAACGGTTACTTGTGTATCCTTACATGGCTAATGGTAGTGTGGCATCATGTTTACGAGACCGCTCGGATTCAAAACCCCCGCTTGAATGGCCTATACGGAAGCGAATCGCGCTGGGAGCTGCAAGGGGGCTTGCTTATTTGCATGATCATTGTAATCCGAAGATCATTCACCGTGATGTTAAAGCTGCCAATATATTATTGGATGAGGAATATGAAGCAGTTGTTGGGGACTTTGGCTTGGCAAAACTCATGGATTACAAAGATACTCATGTTACCACAGCTGTGCGCGGTACAATTGGGCACATTGCACCAGAATACCTCTCCACTGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGTTATGGTGTGATGCTTCTTGAACTAATAACCGGACAGAGGGCTTTCGATCTTGCACGACTTGCCAACGATGATGATGTCATGTTACTTGATTGGGTGAAAGGACTTTTGAAAGACAAGAAATTGGAAACACTGGTGGATGCTGATTTGGCGGGTGAATATAATGAAGAGGAGGTAGAGCAACTAATCCAAGTGGCCTTGCTCTGCACACAAAGCTCGGCTATGGAAAGACCAAAGATGTCTGAGGTGGTAAGGATGCTTGAAGGTGATGGTTTGGCTGAAAAATGGGATCAATGGCAGAAAGACGAGATGCATCGGCGAGATAATCAAACCCTTCTCCCCAATCCTAATTGGCCAATTGCGGATTCAGCTTCACATATCCCCCCAGATGAACTTTCAGGTCCCAGATGA 1857 0.4453 MRHMDRMISSFMGALLLCAILVFNLVLNASGNAEGDALNAFRTSVADPNNVLQSWDATLVNPCTWFHVTCNSENSVNRVDLGNANLSGQLVAQLGLLPNLQYLELYSNNITGKIPDEFGNLTNLVSLDLYANNISGRIPETLGKLQKLRFLRLNNNFLNGAIPMTLTTVNSLQVLDLSTNKLQGDIPTSGSFQSFTELSFEKNPDLKPLNITPRPISPTPPPSRSGRSTTGAIAGGVAAAAALMFAAPAIALAYCRKRRPQDYFFDVPAEEDPEVHLGQLKKFPLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTQGGELQFQTEVEMISLAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRDRSDSKPPLEWPIRKRIALGAARGLAYLHDHCNPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKKLETLVDADLAGEYNEEEVEQLIQVALLCTQSSAMERPKMSEVVRMLEGDGLAEKWDQWQKDEMHRRDNQTLLPNPNWPIADSASHIPPDELSGPR 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g0880 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Alju03g0880 618 MobiDBLite consensus disorder prediction 585 618 - -
Alju03g0880 618 Gene3D Transferase(Phosphotransferase) domain 1 372 589 - -
Alju03g0880 618 MobiDBLite consensus disorder prediction 203 230 - -
Alju03g0880 618 Gene3D Phosphorylase Kinase; domain 1 264 371 - -
Alju03g0880 618 SMART LRR_typ_2 97 120 IPR003591 -
Alju03g0880 618 SMART LRR_typ_2 169 194 IPR003591 -
Alju03g0880 618 SMART LRR_typ_2 121 145 IPR003591 -
Alju03g0880 618 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Alju03g0880 618 Pfam Leucine rich repeat 97 134 IPR001611 GO:0005515
Alju03g0880 618 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 16 579 - -
Alju03g0880 618 SMART serkin_6 295 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju03g0880 618 ProSiteProfiles Protein kinase domain profile. 295 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju03g0880 618 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
Alju03g0880 618 FunFam Somatic embryogenesis receptor kinase 1 30 219 - -
Alju03g0880 618 Pfam Protein kinase domain 296 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju03g0880 618 FunFam Somatic embryogenesis receptor-like kinase 1 372 589 - -
Alju03g0880 618 SUPERFAMILY Protein kinase-like (PK-like) 275 570 IPR011009 -
Alju03g0880 618 FunFam Somatic embryogenesis receptor kinase 1 264 371 - -
Alju03g0880 618 SUPERFAMILY L domain-like 34 222 - -
Alju03g0880 618 Gene3D Ribonuclease Inhibitor 31 212 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g0880 Alju-ChrAlju03 35357003 35364297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g0880 20 618 Receptor kinase-like Gene Family AT4G33430 73.806 0.0 910
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Alju03g0880 Pkinase 9.7e-45 CL0016