Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g0727 ATGTCATTCCGGTGTATAGTTCGTGATGTGAGAGATAGCTTAGGGAGCTTATCTAGACGGAGTTTTGATGTGCGGCTGACTGGTTATCACAGAGGAAAATCTCATGGTGCTATACATGATCAGCCAGAAGTAATTGAAGATAGTTGCTGGGCTAGCTTGCCCCTGGAATTGTTGTATGATATCATTAAAAGGCTAGAAGAGAGTGAAAGTACATGGCCTGCTCGAAAGCATGTTGTTGCATGTGCTGCGGTATGCCAGTCTTGGAAGACTATGTGCAAAGAAATCGTTAAGAGTCCAGAGTTTAGTGGCAAGCTTACTTTCCCTGTGTCCTTGAAGCAGCCAGGACCGCGAGACGGAACCATTCAGTGTTTCATCAAAAGGGATAAATCTAACTTATCATATCGCCTTTTCCTTTCTCTCAGCCCTACTTTGTTAATTGAAAATGGAAAATTCCTCCTTTCTGCTAAGAGGACAAGAAGAACAACTTACACAGAGTATGTTATTTCCATGGATGCTGGCAATATCTCTCGATCGAGTAGCTCTTACATTGGAAAGTTGAGATCAAACTTGCTGGGTACCAAATATGTAATTTATGATACACAGCCTCCCTACAATTCTACCCATGTACCACCACCGCCGGGGAGGACAAGCCGAAGGTTTTATTTGAAAAAGGTATCACCAAAGGTCCCATCTGGGAGTTACAGCATAGCTCAAGTAACATATGAATTAAATGTTCTCGGGACACGAGGCCCAAGAAAGATGCACTGCATTATGCATTCAGTACCGGCATCAGCACTTGACGCTGGTGGCACGGTCCCTGGCCAACATGAGCTTCTTCCTCACCCCCTGGGGGACTCATTCCGGAGCATGTCCTTTACAAAATCCTTAGACCGCTCTGTTGAGTTCAGCAGCTCAAGATTTTCTGAGTTGAGGGAAGGCAGCAATGTGGAGGAGGGTGCGGACGGCAAGGCAGGGCCCTTGGTTCTGAAAAACAAACCTCCAAGATGGCATGAACAATTGCAGTGTTGGTGCCTTAACTTCCGCGGCCGGGTAACCGTTGCATCGGTTAAAAACTTTCAGTTGATTGCTGCCACTCAGCTGGCCACAGCCGATGCTCCTGTGCCGTCTCAGCCAGCGCCACCGCCTGAGCAAGAAAAGATAATCTTGCAGTTTGGTAAAGTTGGGAAAGATATGTTCACCATGGATTACCGATATCCTCTATCTGCCTTCCAGGCTTTTGCGATATGCTTGAGCAGCTTTGACACCAAATTGGCCTGTGAATAA 1284 0.4642 MSFRCIVRDVRDSLGSLSRRSFDVRLTGYHRGKSHGAIHDQPEVIEDSCWASLPLELLYDIIKRLEESESTWPARKHVVACAAVCQSWKTMCKEIVKSPEFSGKLTFPVSLKQPGPRDGTIQCFIKRDKSNLSYRLFLSLSPTLLIENGKFLLSAKRTRRTTYTEYVISMDAGNISRSSSSYIGKLRSNLLGTKYVIYDTQPPYNSTHVPPPPGRTSRRFYLKKVSPKVPSGSYSIAQVTYELNVLGTRGPRKMHCIMHSVPASALDAGGTVPGQHELLPHPLGDSFRSMSFTKSLDRSVEFSSSRFSELREGSNVEEGADGKAGPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQLATADAPVPSQPAPPPEQEKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g0727 427 CDD F-box_AtTLP-like 50 94 - -
Alju03g0727 427 PANTHER TUBBY-RELATED 43 425 - -
Alju03g0727 427 Pfam F-box domain 50 97 IPR001810 GO:0005515
Alju03g0727 427 ProSitePatterns Tub family signature 2. 412 427 IPR018066 -
Alju03g0727 427 SUPERFAMILY Tubby C-terminal domain-like 99 427 IPR025659 -
Alju03g0727 427 Pfam Tub family 111 422 IPR000007 -
Alju03g0727 427 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Alju03g0727 427 Gene3D Tubby Protein; Chain A 109 421 IPR025659 -
Alju03g0727 427 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Alju03g0727 427 PRINTS Tubby superfamily signature 384 403 IPR000007 -
Alju03g0727 427 PRINTS Tubby superfamily signature 182 206 IPR000007 -
Alju03g0727 427 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Alju03g0727 427 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Alju03g0727 427 PRINTS Tubby superfamily signature 166 182 IPR000007 -
Alju03g0727 427 PRINTS Tubby superfamily signature 405 427 IPR000007 -
Alju03g0727 427 SUPERFAMILY F-box domain 46 94 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g0727 Alju-ChrAlju03 31506451 31508482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g0727 1 427 TUB Transcription Factor Family AT1G76900 66.593 0.0 579
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Alju03g0727 Tub 3e-113 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g0727 03 31506451 31508482 Alju03g0727 03 31506451 31508482 ECH