Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g0678 ATGGCTTCTAATTCCCAGGACCCGTACAGTCCCATCCACTTTTACAGAGTCATCTCCAAAACCAATCTTGATGCCATTATGATTCCAAGCAAATTTACAGTCAGATATGGAAGATGTTTGTCCAACCCAGTGTGTCTGAAGTCTCCTGATGGTAAAGAATGGAAAGTGTATTGGGCAAAACGCGATAATGATTTTTGGTTACAAAAGGGATGGAAAGAATTTACTAATTTTTACTCTCTAGATGTTGGTTATCTGGTTCTGTTCAAATATGAAGGAACTTCTCAGCTTGGTGTACACATAACTGACAAGAGTGCCCTAGAAATAGAATATCCTTTTTCTACGCACGCCTCTAGTCAAGAGGACAATCTTGATAATCTCAATGATGATACGGTTGTAATCTTGGACAAGACGCCTCCAAGCCCTGAGGACAAGCTTGATAATCTTAGTGATGATACAATCGAAATCTTGGATGAGATGCCTCAAAGCCCTAAGGCTAGTGACAATACGCCCTCGACATCTTCTAGGCCTCATAAGAAAACGAGAAGTACTACAGATGAAGATGTTGAAATGAGAAGCTTCAATCTGCAGAATATGCCTGTGGGCATGAAAACCGAAGACAGGCAACTTCAAGGAACAAAACTGAAGACAGAAAATATGCCCTTGTCATCTTCTAGGCCTCTTAAGAAAATGAGAAGTACTACAGATGAAGATGTTGAAACGAGAAGCTTCAATCTGCAGAATATGCCAGTGGGCATGAAAACTGAAGACAGGCAATTTCATGCAACAAAACTTCAGAAATCAGCCAATGCAGACTTACAATTTTCGCAGCAGAAATCTGAAGGAGACACAGGAACAAGAATTTTTGGAAAGAGTAAATGTCTGAATTCTGAGAATGGAATGAAGAAAGTATTAACTGCTGTGAAAAAGGACATTGCTTCGGAGAGTGCCAATTCTTTGGATACTGATAAGCCCTATTTCACTATGGTCATGCGCCCTTCATATGTCGGTCCTAAGACTTGTTTGCCAATTCCAAGAGAATTTGCTAAAAAATATTTGGGGGAAGATTGTGAAGTTGTTAAACTTCAGGCCTTGGATGGGAGAATTTGGCATGCTAAGTATAGGTTTCCCAAAATTGGAAAAGGCTGGAGGAATTTTGTGAACGAAGGTGGATTGAAGGAGGGACATGTCTGTGCATTTGAAATGATTGGTCCCTCATTATTCAAAGTTCATATTTTAAGAGAGGCTGAAAAAGGAAATCTGAAAGTTAACTCTGTTGAAGAAAAAAAGAAAGTTAACTCTTTTGAAAAGAAACAGAGCAGCAGGATGCAAGATCCACCTCTTGAAAAGGCTGGCTCTTCCAAATCTGAAAATCGTCATTTTACGGTAATGATGACTCATGCTCACATTCATGGCACATCATACCTGCATGTGCCAATTGAATATGCAAAAGCACATCTTCGTAATAATACTACTAAGAGTGTAACACTTGTTGTACAAGATAAAGACTGGACTGTTGGTTACGCATTTAGAAGTTATAATAAACAACAACAAAGTGCTCAATTTTCTTGGGGATGGAAGCAATTCTGTAAGGATAATGACTTGAAAGTAGGGGATGTTTGTGAGTTTGAGCTCACTCAGAAATTCAGATTTCAAGTGACAGTTTATCGGGTCACCTCTAAAAACCCGGTTCATTCAGGCAACTAG 1704 0.3932 MASNSQDPYSPIHFYRVISKTNLDAIMIPSKFTVRYGRCLSNPVCLKSPDGKEWKVYWAKRDNDFWLQKGWKEFTNFYSLDVGYLVLFKYEGTSQLGVHITDKSALEIEYPFSTHASSQEDNLDNLNDDTVVILDKTPPSPEDKLDNLSDDTIEILDEMPQSPKASDNTPSTSSRPHKKTRSTTDEDVEMRSFNLQNMPVGMKTEDRQLQGTKLKTENMPLSSSRPLKKMRSTTDEDVETRSFNLQNMPVGMKTEDRQFHATKLQKSANADLQFSQQKSEGDTGTRIFGKSKCLNSENGMKKVLTAVKKDIASESANSLDTDKPYFTMVMRPSYVGPKTCLPIPREFAKKYLGEDCEVVKLQALDGRIWHAKYRFPKIGKGWRNFVNEGGLKEGHVCAFEMIGPSLFKVHILREAEKGNLKVNSVEEKKKVNSFEKKQSSRMQDPPLEKAGSSKSENRHFTVMMTHAHIHGTSYLHVPIEYAKAHLRNNTTKSVTLVVQDKDWTVGYAFRSYNKQQQSAQFSWGWKQFCKDNDLKVGDVCEFELTQKFRFQVTVYRVTSKNPVHSGN 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g0678 567 SUPERFAMILY DNA-binding pseudobarrel domain 319 413 IPR015300 -
Alju03g0678 567 CDD B3_DNA 458 556 IPR003340 GO:0003677
Alju03g0678 567 CDD B3_DNA 13 102 IPR003340 GO:0003677
Alju03g0678 567 SMART B3_2 326 415 IPR003340 GO:0003677
Alju03g0678 567 SMART B3_2 460 558 IPR003340 GO:0003677
Alju03g0678 567 SMART B3_2 14 104 IPR003340 GO:0003677
Alju03g0678 567 CDD B3_DNA 324 413 IPR003340 GO:0003677
Alju03g0678 567 ProSiteProfiles B3 DNA-binding domain profile. 460 558 IPR003340 GO:0003677
Alju03g0678 567 ProSiteProfiles B3 DNA-binding domain profile. 11 104 IPR003340 GO:0003677
Alju03g0678 567 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 432 565 IPR044837 -
Alju03g0678 567 Gene3D - 8 105 IPR015300 -
Alju03g0678 567 MobiDBLite consensus disorder prediction 162 177 - -
Alju03g0678 567 MobiDBLite consensus disorder prediction 158 190 - -
Alju03g0678 567 ProSiteProfiles B3 DNA-binding domain profile. 326 415 IPR003340 GO:0003677
Alju03g0678 567 MobiDBLite consensus disorder prediction 218 238 - -
Alju03g0678 567 SUPERFAMILY DNA-binding pseudobarrel domain 455 558 IPR015300 -
Alju03g0678 567 MobiDBLite consensus disorder prediction 431 455 - -
Alju03g0678 567 Pfam B3 DNA binding domain 326 413 IPR003340 GO:0003677
Alju03g0678 567 Pfam B3 DNA binding domain 20 102 IPR003340 GO:0003677
Alju03g0678 567 Pfam B3 DNA binding domain 460 556 IPR003340 GO:0003677
Alju03g0678 567 SUPERFAMILY DNA-binding pseudobarrel domain 10 104 IPR015300 -
Alju03g0678 567 Gene3D - 438 559 IPR015300 -
Alju03g0678 567 Gene3D - 303 417 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g0678 Alju-ChrAlju03 29202661 29206905 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g0678 447 557 B3 DNA Binding Superfamily AT3G18990 27.434 1.89e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Alju03g0678 B3 5.4e-16 CL0405