Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g0584 ATGGCATTTGTGGCTTCAAATCAGACATCTGGTGGAAACCATGCAGGGGCAACCAATGATGATTTGTACAAGGAACTGTGGCGTGCCTGTGCTGGTCCTCTTGTCACTCTTCCTCGTGCAGGGGAGCAAGTTTATTACTTTCCACAAGGCCACATGGAACAGCTTGAGGCTTCAATGCATCAGGGGTCTGATCAGCAAATGCCTTCCTTCAATCTGCCTTCTAAGATTCTGTGTAAGGTCGTCAATGTTCATCTACGGGCTGAGCCTGAAACAGATGAAGTCTATGCACAAATAACTTTGCTCCCTGAAGCCGACCAAAGTGAAGTGACAAGCCCTGATGATCCTCTGCCAGAGCCTACTAGGTGCACAGTTCATTCCTTCTGCAAAACGCTTACTGCATCTGACACCAGCACTCATGGAGGTTTTTCTGTTCTTCGAAGACATGCGGATGATTGTCTGCCACCCCTGGATATGTCTCAGCAGCCACCGTGGCAAGAATTAGTTGCAACTGATTTGCATGGGAATGAATGGCATTTTCGACACATATTTCGAGGGCAACCTAGGCGCCACTTACTTACGACTGGATGGAGTGTGTTTGTAAGCTCCAAGAAATTGGTGGCCGGTGATGCTTTTATATTCCTAAGAGGTGAAAATGGGGAGCTGCGAGTTGGAGTTAGGCGGCTCATGAGACAACAAAACAATATGCCATCATCTGTCATATCCAGTCACAGTATGCATATTGGTGTTCTAGCAACAGCATCTCATGCAATTGCGACCGGAACACTGTTTTCTGTGTTCTACAAGCCCAGGACAAGCCGATCGGAGTTTATTGTTAGTGTCAACGAGTATCTTGAAGCTCGAAGTCATAAGCTTTCTGTTGGGATGAGATTCAAGATGAGATTTGAGGGCGATGAAGTTCCTGAAAGAAGGTTCAGTGGCACAATTGTGGGTGTTGAAGATAATAACTCACCTGTCTGGCTTGATTCTGAGTGGCGATCATTAAAGGTGCAATGGGATGAACCATCATCAATTTTACGTCCTGATAGAGTCTCTCCTTGGGAATTAGAGCCACTTGTGGCCACCGCTCCTGCGAATGTTGAACCAACTCAGAGAAATAAGAGGGCTCGACTTCCTGTTCTACCTTCAACAGTACCTGATTCTTCTCTGCATGGGGCATGGAAACCATCAACTGAATCTCCATCTTTCTCTTACCATGACTCACAACATGGACAAAATCTCTACCAAAATTCTATGCTCAATTCTACTGCAACTAACTTTATTGGTTTTGGTGGGAACAAGTCTCTGGGGACTGCTTCCAACAATTCCATAAGTTGGTCTAACAGGATGGAGAACTCTACAGAGCATTTTTTGCCTTTAGCTCTTAATGAATCTGGTGAGAAGAAACAAAGCACTGGAAATGGCTGTAGGCTCTTTGGGATTCAGCTACTTGAGAAATCCAATGTAGAAGAAAGTATGCCAAGAGTCATATTGTCGGAGAGGGTGGGGGATGATGGGTCAGTTCCATGTGTAGATGCTGAGTCTGATCAGCTTTCTGAACCATCAAATGTCAATGGATCTTATATCCCATCATTGAGTATTGATGCTGACAAATCAAATCTTCAGTTTCCTCAGGAGTCACAAAGCAGGCAAACAAGGAGCTGCACTAAGGTTCACATGCAAGGAATGGCTGTTGGCAGGGCTGTGGATTTGTCACGGTTTGATGGATATGAGGATCTGCTTAAAAAGTTGGAGGGAATGTTTGACATCAAGGGTGAGTTGGATAAATCCGCGAAGAAATGGCAGGTTGTCTACACTGACAATGAGGATGATATGATGATGGTTGGAGATGATCCTTGGAATGAGTTCTGCACTGTGGTGAGAAAAATATTTATCTACACACCAGAGGAGGTGAAGAAGCTTTCACCCAAAATCGGGCTTCCAATCAATGAAGTTAAACCAAGCAAGGTGGATTCTGAAGCAGCAGTCAATAGTGATGACCAGTCATCTACTGTGGGGCCTAGCTGCTAA 2028 0.4502 MAFVASNQTSGGNHAGATNDDLYKELWRACAGPLVTLPRAGEQVYYFPQGHMEQLEASMHQGSDQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEADQSEVTSPDDPLPEPTRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQNNMPSSVISSHSMHIGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNEYLEARSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVEDNNSPVWLDSEWRSLKVQWDEPSSILRPDRVSPWELEPLVATAPANVEPTQRNKRARLPVLPSTVPDSSLHGAWKPSTESPSFSYHDSQHGQNLYQNSMLNSTATNFIGFGGNKSLGTASNNSISWSNRMENSTEHFLPLALNESGEKKQSTGNGCRLFGIQLLEKSNVEESMPRVILSERVGDDGSVPCVDAESDQLSEPSNVNGSYIPSLSIDADKSNLQFPQESQSRQTRSCTKVHMQGMAVGRAVDLSRFDGYEDLLKKLEGMFDIKGELDKSAKKWQVVYTDNEDDMMMVGDDPWNEFCTVVRKIFIYTPEEVKKLSPKIGLPINEVKPSKVDSEAAVNSDDQSSTVGPSC 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g0584 675 ProSiteProfiles PB1 domain profile. 552 645 IPR000270 GO:0005515
Alju03g0584 675 SMART B3_2 127 229 IPR003340 GO:0003677
Alju03g0584 675 Gene3D - 547 641 - -
Alju03g0584 675 Pfam Auxin response factor 253 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Alju03g0584 675 MobiDBLite consensus disorder prediction 389 409 - -
Alju03g0584 675 MobiDBLite consensus disorder prediction 386 409 - -
Alju03g0584 675 FunFam Auxin response factor 547 641 - -
Alju03g0584 675 Pfam B3 DNA binding domain 127 227 IPR003340 GO:0003677
Alju03g0584 675 Gene3D - 124 229 IPR015300 -
Alju03g0584 675 SUPERFAMILY CAD & PB1 domains 552 629 - -
Alju03g0584 675 CDD B3_DNA 125 227 IPR003340 GO:0003677
Alju03g0584 675 MobiDBLite consensus disorder prediction 660 675 - -
Alju03g0584 675 Pfam AUX/IAA family 546 642 IPR033389 -
Alju03g0584 675 Gene3D - 290 363 - -
Alju03g0584 675 FunFam Auxin response factor 290 362 - -
Alju03g0584 675 MobiDBLite consensus disorder prediction 655 675 - -
Alju03g0584 675 SUPERFAMILY DNA-binding pseudobarrel domain 116 256 IPR015300 -
Alju03g0584 675 FunFam Auxin response factor 125 229 - -
Alju03g0584 675 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Alju03g0584 675 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 641 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g0584 Alju-ChrAlju03 25356369 25363434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g0584 4 674 B3 DNA Binding Superfamily AT1G59750 69.539 0.0 925
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Alju03g0584 AUX_IAA 1.7e-11 CL0072