Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g0582 ATGGAAGAACCATCGAAGGAGGAAGACGGGAAAGAGAAGCCTGCCTGCATTGAAAAGAACGAGGAAGATGAGAAGGCCGCATTAGCGGTAGGCATGAATCGGAAGGAGAAGAGGAAGGCCACGAAGAAACTGAAGCGGAAGCAATTGAGGAAGGAGATAGCAGCGAAGGAGCGCGAGGAAGAGGAGGCTCGGCTCAACGATCCCGAGGAGCAGAAAAGAGCTCTTCTGATGGAGCAGGAAGAGGCCGAGAGGGTTGAGCGGGAGATGAAGCTGTTTGAGGAGAGAGAGAGGGCGTGGATCGAGACTATGGAGAGGAAGATGAAGGAGGTGGCAGAAGAAGAGCAGAGGAAGCTTCTTGAAGACTCTCATAAGCAACAGCAAGAGAAGGAGACCGAATTGAATGAGGACGATGAATGGGAATATGTGGAGGAAGGGCCTGCAGAAATTATTTGGCAGGGAAACGAGATAATTTTTAAAAAGAAAAAGGTGAGGGTTCTCAAGAAGGACTCGAGCCACCAAAATAAGACGGAGAATGCTGATAAACCTACATCAAATCCTCTACCTCCCCAATCCGAAGCTTTTGCTGATTACTCAAGTTCATCAGCAGTTTCTGCACAGCAGGTTCTTGAGAGTGTTGCACAACAAGTGCCTAATTTTGGGACTGAACAGGATAAAGCTCATTGCCCCTTTCATTTAAAAACGGGAGCATGTCGATTTGGACAACGTTGTAGCAGAGTTCATTTTTACCCTGATAAATCAAGCACACTTCTTATGAAAAACATGTACAATGGTCCAGGCCTTGCTTGGGAGCAAGACGAGGGGCTTGAGGTCTGTTAA 837 0.4755 MEEPSKEEDGKEKPACIEKNEEDEKAALAVGMNRKEKRKATKKLKRKQLRKEIAAKEREEEEARLNDPEEQKRALLMEQEEAERVEREMKLFEERERAWIETMERKMKEVAEEEQRKLLEDSHKQQQEKETELNEDDEWEYVEEGPAEIIWQGNEIIFKKKKVRVLKKDSSHQNKTENADKPTSNPLPPQSEAFADYSSSSAVSAQQVLESVAQQVPNFGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPDKSSTLLMKNMYNGPGLAWEQDEGLEVC 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g0582 278 MobiDBLite consensus disorder prediction 110 139 - -
Alju03g0582 278 Coils Coil 32 66 - -
Alju03g0582 278 PRINTS U2 auxiliary factor small subunit signature 247 267 IPR009145 GO:0000398|GO:0003723|GO:0089701
Alju03g0582 278 PRINTS U2 auxiliary factor small subunit signature 228 247 IPR009145 GO:0000398|GO:0003723|GO:0089701
Alju03g0582 278 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 227 247 IPR000571 GO:0046872
Alju03g0582 278 MobiDBLite consensus disorder prediction 110 131 - -
Alju03g0582 278 MobiDBLite consensus disorder prediction 1 71 - -
Alju03g0582 278 MobiDBLite consensus disorder prediction 50 71 - -
Alju03g0582 278 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 208 277 IPR009145 GO:0000398|GO:0003723|GO:0089701
Alju03g0582 278 Coils Coil 75 95 - -
Alju03g0582 278 MobiDBLite consensus disorder prediction 177 194 - -
Alju03g0582 278 MobiDBLite consensus disorder prediction 169 194 - -
Alju03g0582 278 Coils Coil 100 136 - -
Alju03g0582 278 ProSiteProfiles Zinc finger C3H1-type profile. 222 250 IPR000571 GO:0046872
Alju03g0582 278 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g0582 Alju-ChrAlju03 25311516 25312958 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju03g0582 zf-CCCH 6.4e-05 CL0537