Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g0575 ATGGATGGTAATGGAGTAGAGAGGGATTTGGAGATAGAAGGTCGTGGGGTGGCGATGATCATGGCGAATGATTATGGGAGACAACAAGACAGGGAAGACAATACATCAGAACCATCCTCAGACGATTTCGTCGTCGTCAAAGAATCGTCTCTCCGAGAGCCTTTGCTTCTCAAGAACAATAGAATGAACAATACTTCGCAGCTCGCCATTGTTGGAGCCAATGTTTGCCCTATTGAAAGTCTTGATTACGAGATCATTGAGAATGATCTATTTAAACAGGATTGGAGGGCTAGAACGAAGGTCGAAATATGTCAATATATCGTTCTTAAATGGGCTCTTGCACTTCTAATTGGTTTGAGCACAGGGCTTGTTGGCTTTTTTAATAACCTTGCTGTTGAGAACATTGCTGGTTTCAAGCTTCTACTCACTAACAGTCTCATGCTCAAAGAAAAGTATTATCAGGCCTTTGCAGCATTTGCCAGTTGTAACATGATTCTGGCCCTTGTTGCGGCCATCCTCTGTGCCTACATCGCCCCTGCAGCAGCCGGGTCTGGCATACCTGAGGTGAAGGCCTACCTCAATGGTATAGATGCCCATTCTATATTGGCTCCAAGTACACTCTTTGTAAAGATATTTGGTTCAATTTTTGGTGTTGCTGCGGGGTTTGTTGTTGGCAAGGAAGGGCCTATGGTACATACTGGTGCTTGCATAGCCAATTTACTCGGACAAGGTGGTTCGCAAAAGTATCGATTGACATGGAAATGGCTCAGATTCTTTAAAAACGATCGAGATCGAAGGGATTTGATCACATGTGGTGCAGCTGCAGGGGTTGCTGCTGCTTTCCGTGCTCCGGTTGGCGGTGTCCTTTTTGCACTTGAAGAAGCAGCTTCATGGTGGAGGAGTGCTCTTCTGTGGCGGACTTTCTTTACAACAGCAGTGGTAGCAGTAGTGCTGAGAAGTTTCATGGATTTGTGTCGGGGTGGAACCTGTGGTCTTTTTGGGGAAGGTGGGTTAATAATGTTTGATGTTAATGAAGCAAACCCTGCGTACAGCGCCCCTGCCCTCCTGGCAGTTGTTTTTCTGGGTGTCATTGGAGGCATTTTCGGAAGCCTTTACAATTACCTTGTGGACAAGGTCCTTCGCTCCTATAGCATCATAAACGAGAGAGGCCCTATATTTAAAATCTTACTTGTTGCTACAATCTCCCTGTTGACCTCTTGTTGTTCATTTGGCCTTCCATGGCTATCAAAATGCATCCCTTGTCCTCCTAACGTGAGGGACCAGTGCCCCACTGTAGGTCGCTCTGGCCACTACAAGAATTTCCAGTGTCCGTCAAATCATTACAACGATCTTGCTTCTCTCTTTTTCAATACTAATGACGATGCCATCCGCACCCTCTTTGTAGCAGGCACAGACAAGGAGTTTAATCTCTCCACACTTATGATCTTCTTTATTGCCATATACTTCCTCGGAATCATCACTTATGGAATCGCTGTTCCCTCCGGGTTATTTATTCCTGTCATACTTGCCGGGGCCTCATATGGGCGACTTGCTGGCACTCTCTTAAGTCCATTCACCGTACTCGATGTTGGATTGTTTTCCCTCCTTGGAGCCGCATCCTTCCTTGGAGGCACCATGAGAATGACTGTTTCTATTTGTGTCATACTCCTTGAACTCACTAATGACCTCCTAATGCTTCCGCTGGTGATGCTGGTTCTTCTTGTTTCAAAGACTGTGGCTGATAGCTTCAACAAAGGTGTATATGATCAGATAGTGAAAATGAAGGGGCTGCCTTATATGGAAGCACATGCTGAACCATACATGAGGCATTTAGTTGCAAGTGATGTTGTCTCTGGCCCCCTGATAACTTTTTCTGGGGTTGAAAAAGTGGGGAATATCATCGATGCCTTGAAGATTACTGGGCACCACGGGTTTCCTGTGATCGACGAGCCTCCTGTCACAGCTGCTCCTGAGTTGTTTGGATTGGTTTTAAGGTCGCATCTGCTTGTGCTTCTTAAGAGGAAGAAGTTCACGAAGCAGAAGGTGATGACTGGATCCACCATTATGAGAAACTTCAAGGCACGTGATTTCGCAAAGCCAGGGTTAGGCAAGGGCCTCAAGCTCGAGGATTTGGACATTTCAAAGGAGGAGATGGAGATGTATGTTGATCTCCATCCGATTACCAACACCTCACCGTATACGGTAGTTGAAACGATGTCTCTAGCAAAAGCTGCAGTTCTTTTCCGGGAGCTCGGCCTCAGGCACTTGTTGGTGGTGCCCAAGACACATGCAAGACCTCCAATTGTTGGGATATTGACAAGGCATGACTTCATGCCTGAGCACATTTTGGGACTATACCCTCATTTGGACCCTCACAAGCAATAA 2385 0.4621 MDGNGVERDLEIEGRGVAMIMANDYGRQQDREDNTSEPSSDDFVVVKESSLREPLLLKNNRMNNTSQLAIVGANVCPIESLDYEIIENDLFKQDWRARTKVEICQYIVLKWALALLIGLSTGLVGFFNNLAVENIAGFKLLLTNSLMLKEKYYQAFAAFASCNMILALVAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSQKYRLTWKWLRFFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRSFMDLCRGGTCGLFGEGGLIMFDVNEANPAYSAPALLAVVFLGVIGGIFGSLYNYLVDKVLRSYSIINERGPIFKILLVATISLLTSCCSFGLPWLSKCIPCPPNVRDQCPTVGRSGHYKNFQCPSNHYNDLASLFFNTNDDAIRTLFVAGTDKEFNLSTLMIFFIAIYFLGIITYGIAVPSGLFIPVILAGASYGRLAGTLLSPFTVLDVGLFSLLGAASFLGGTMRMTVSICVILLELTNDLLMLPLVMLVLLVSKTVADSFNKGVYDQIVKMKGLPYMEAHAEPYMRHLVASDVVSGPLITFSGVEKVGNIIDALKITGHHGFPVIDEPPVTAAPELFGLVLRSHLLVLLKRKKFTKQKVMTGSTIMRNFKARDFAKPGLGKGLKLEDLDISKEEMEMYVDLHPITNTSPYTVVETMSLAKAAVLFRELGLRHLLVVPKTHARPPIVGILTRHDFMPEHILGLYPHLDPHKQ 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g0575 794 CDD CBS_pair_voltage-gated_CLC_euk_bac 613 780 - -
Alju03g0575 794 Pfam Voltage gated chloride channel 167 581 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju03g0575 794 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 47 784 - -
Alju03g0575 794 CDD ClC_6_like 79 600 - -
Alju03g0575 794 FunFam Chloride channel ClC3 102 417 - -
Alju03g0575 794 SMART cbs_1 620 673 IPR000644 -
Alju03g0575 794 SMART cbs_1 731 782 IPR000644 -
Alju03g0575 794 SUPERFAMILY Clc chloride channel 88 602 IPR014743 -
Alju03g0575 794 Gene3D - 601 779 IPR046342 -
Alju03g0575 794 PRINTS Plant CLC chloride channel signature 295 303 IPR002251 GO:0005247|GO:0006821|GO:0016020
Alju03g0575 794 PRINTS Plant CLC chloride channel signature 84 92 IPR002251 GO:0005247|GO:0006821|GO:0016020
Alju03g0575 794 PRINTS Plant CLC chloride channel signature 327 334 IPR002251 GO:0005247|GO:0006821|GO:0016020
Alju03g0575 794 PRINTS Plant CLC chloride channel signature 309 319 IPR002251 GO:0005247|GO:0006821|GO:0016020
Alju03g0575 794 PRINTS Plant CLC chloride channel signature 451 467 IPR002251 GO:0005247|GO:0006821|GO:0016020
Alju03g0575 794 Gene3D Clc chloride channel 102 600 - -
Alju03g0575 794 ProSiteProfiles CBS domain profile. 727 791 IPR000644 -
Alju03g0575 794 Pfam CBS domain 729 777 IPR000644 -
Alju03g0575 794 PRINTS Chloride channel signature 499 519 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju03g0575 794 PRINTS Chloride channel signature 274 293 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju03g0575 794 PRINTS Chloride channel signature 587 601 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju03g0575 794 PRINTS Chloride channel signature 179 196 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju03g0575 794 PRINTS Chloride channel signature 549 568 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju03g0575 794 PRINTS Chloride channel signature 531 547 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju03g0575 794 PRINTS Chloride channel signature 210 229 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju03g0575 794 SUPERFAMILY CBS-domain pair 604 778 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g0575 Alju-ChrAlju03 24614761 24620092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g0575 51 793 Ion Channels AT5G49890 79.973 0.0 1180
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g0575 03 24614761 24620092 Alju03g0575 03 24614761 24620092 ECH