Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g0545 ATGGTGAAGTCTTCATCGTGCTGCGAGGAACAAGTAGGGTTAAAGAAAGGAACATGGACTCCTGGGGAAGACCAGAAGCTCATGTCTTACATTCAACTACACGGACATGGAAGCTGGTCTTCCTTGCCTGATAAAGCTGGACTAAGGAGACGTGGGAAGAGCTGTAGGCTGAGATGGATTAATTATCTAAGCCCTGACATCAAACGAGGCAACTTTAGTTTACTCGAAGATCAAACCATTATTCAACTTCATGCTCTCCTTGGAAACAGATGGTCGGTGATAGCACATCACTTGCCAAAAAGAACAGACAATGAGATCAAGAATCACTGGAACACCCACCTCAAGAAGAGGCTCATTAGAATGGGCATCAACCCCACCACCCACAAGCCCTTAAACGACGCAGCCAACCTCAGCCACATGGCTCAGTGGGAGACTGCTCGGCTCGAAGCCGAAGCCAGGCAAGTCAAAGAATATTCCAAGCTGCAGCTCGAGAACCAGCTCGGCTCCTCCTCCTCCTCTTCTCAGCCTTCACTAACTCGGCTCATCCTCAACAAGATCACACCTCGCCCATCTCCACCACCGTGCCTCGACGTCCTTAAGGTATGGAAGAATTCATGGTTGTCCACGTCAGCAGATCATAGCACCCCCAAAATGCATAGCATGTACGCCATGATGCTCGCCACGGACGACCTTGAGTCGCCGGCGTCAACGTTGAGTTTCCTGGATAACGTCCCTAGCAACTCCAAATGTACTAATAGTAACTTTTGGTCGATGAATAAAAGTTCGCTTTCTTCCATCACCACTACCACCGTCAATAAAGACAATGGAATCATGGAAGGAGCGAGAGACGGTGAACCATGTGGAAACAAAGAGCAAAGTAGTGGAGACGACGGTATTATGGCGGCCATGGGAGCATTATTTCCCAGTGTTGGGCAATATTATGAAGGTAATGAGATGTCACCAAAACAAAACTTGGGAGTGTCAAGTGTTGGGGATGACTGGGAAGCCATTCTTGACCTGGTCATCAATGGTTGGCCCCGATCACCTGCTTTCCCTGTGGTGTGA 1065 0.4883 MVKSSSCCEEQVGLKKGTWTPGEDQKLMSYIQLHGHGSWSSLPDKAGLRRRGKSCRLRWINYLSPDIKRGNFSLLEDQTIIQLHALLGNRWSVIAHHLPKRTDNEIKNHWNTHLKKRLIRMGINPTTHKPLNDAANLSHMAQWETARLEAEARQVKEYSKLQLENQLGSSSSSSQPSLTRLILNKITPRPSPPPCLDVLKVWKNSWLSTSADHSTPKMHSMYAMMLATDDLESPASTLSFLDNVPSNSKCTNSNFWSMNKSSLSSITTTTVNKDNGIMEGARDGEPCGNKEQSSGDDGIMAAMGALFPSVGQYYEGNEMSPKQNLGVSSVGDDWEAILDLVINGWPRSPAFPVV 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g0545 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Alju03g0545 354 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 253 - -
Alju03g0545 354 FunFam MYB-related transcription factor 15 68 - -
Alju03g0545 354 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Alju03g0545 354 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Alju03g0545 354 CDD SANT 71 114 IPR001005 -
Alju03g0545 354 CDD SANT 18 63 IPR001005 -
Alju03g0545 354 SMART sant 68 116 IPR001005 -
Alju03g0545 354 SMART sant 15 65 IPR001005 -
Alju03g0545 354 FunFam MYB transcription factor 70 131 - -
Alju03g0545 354 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Alju03g0545 354 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Alju03g0545 354 Gene3D - 15 68 - -
Alju03g0545 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 63 IPR017930 -
Alju03g0545 354 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Alju03g0545 354 Gene3D - 71 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g0545 Alju-ChrAlju03 23719564 23720928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g0545 5 176 MYB Transcription Factor Family AT5G15310 67.213 7.51e-81 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju03g0545 Myb_DNA-binding 1.3e-12 CL0123