Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g0544 ATGCGCGTAGCCTTTGTGTTATTTGTTCCCTTATTTCTACTTTGCTCTTCTGTTTCTGGGTATTCATGGAATCAGGTTAAGCTTTGGTGCAACCAAACGCCTAATCCTCAGCCATGTGAGTACTTCCTCAACAACAATCCCGTTCATAGCCAAAAGATCATCAAACACAAACATGACTTTCTTAAGCTTTCACTTCAACTAGCCCAAGAGCGAGCGTTGATTGGCCATACAAATACTCTTTCTCTAGGACCCAAGTGTCGTAATCCTCAAGAAAAAGCTGCATGGTCTGATTGTATTGAGCTTTATGAGCATACAATCCACAGACTCAACAAAACCCTAGACCCCATCATCAAATGCTCCCAAGATGATGCTCAAACATGGCTCAGCACCGCTCTCACCAACCTTGAGACATGCCGAGCCGGGTTCTATGAGCTCGGGGTCCAAGATTACATGTTGCCTTTGATGTCCAACAACGTGACTATGTTGTTGAGCAACACTTTGGCTTTGAACAAAGTTGAATACAAAGAGCCAAGTTATAAAGATGGGTTTCCGACATGGGTTAAGCCTGGAGATAGGAAGTTGTTGCAGTCGTCTTCTTCATCTTCTAGGGCTAACGTCGTTGTGGCTAAAGATGGATCTGGCAAATACACAACTATAAGTGCAGCTATAAATGCAGCACCAAAGAGTAGTAGTGGGAGATATGTGATATACGTGAAGGCTGGAACTTACAACGAACAGGTAGAGATAAAGGCAAAGAATATCATGTTACTTGGAGATGGTATTGGGAAGACTATAATCACAGGAAGCAAAAGTGTTGGAGGAGGCACAACAACCTTCCGGTCAGCAACTGTGGGTGTTGTAGGGGATGGATTTATTGCACAAGGCATCACGTTTAGAAACACTGCTGGAGCTTCAAATCACCAAGCTGTTGCACTACGTTCTGGTTCAGATTTATCAGTCTTCTACAGATGCAGCTTTGAAGGTTACCAAGACACATTATATGTTCACTCTGAGCGACAATTCTACAGAGAATGTGACATCTACGGCACAGTTGATTTCATCTTTGGGAATGCAGCAGCGGTTTTCCAAAGCTGCAACATTTTTGCAAGAAACCCTCCCAACAAAGTCAACACAGTCACAGCCCAAGGTCGAAGTGATCCAAACCAAAACACAGGAATTTCTATTCACAATTGTAGGGTTACAGCTGCTTCAGATTTAAAGCCAGTTCAAAGCTCTGTGAGGACCTATCTTGGAAGGCCATGGCAACAATATTCTCGAACAGTCTTCATGAAAACTTTCTTGGACAGTTTGATAAACCAAGCTGGTTGGTTGGAGTGGAGTGGTAACTTTGCCTTGAACACTCTGTACTATGGAGAGTACATGAATACTGGTGCAGGATCATCCACTGCAAATCGTGTTAAGTGGCCTGGCTATCATGTGATTTCTAGTGCCTCTGAAGCTTCCAAATTCACTGTTGCAAACTTCATCGGAGGGAATTCATGGTTGCCATCCACCAATGTTCCTTTCACTTCTACTTTATAG 1542 0.4332 MRVAFVLFVPLFLLCSSVSGYSWNQVKLWCNQTPNPQPCEYFLNNNPVHSQKIIKHKHDFLKLSLQLAQERALIGHTNTLSLGPKCRNPQEKAAWSDCIELYEHTIHRLNKTLDPIIKCSQDDAQTWLSTALTNLETCRAGFYELGVQDYMLPLMSNNVTMLLSNTLALNKVEYKEPSYKDGFPTWVKPGDRKLLQSSSSSSRANVVVAKDGSGKYTTISAAINAAPKSSSGRYVIYVKAGTYNEQVEIKAKNIMLLGDGIGKTIITGSKSVGGGTTTFRSATVGVVGDGFIAQGITFRNTAGASNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAAVFQSCNIFARNPPNKVNTVTAQGRSDPNQNTGISIHNCRVTAASDLKPVQSSVRTYLGRPWQQYSRTVFMKTFLDSLINQAGWLEWSGNFALNTLYYGEYMNTGAGSSTANRVKWPGYHVISSASEASKFTVANFIGGNSWLPSTNVPFTSTL 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g0544 513 SMART complete 238 416 IPR006633 -
Alju03g0544 513 NCBIfam pectinesterase inhibitor domain 7 171 IPR006501 GO:0004857
Alju03g0544 513 PANTHER PECTINESTERASE 12 505 - -
Alju03g0544 513 CDD PMEI-like_3 28 171 - -
Alju03g0544 513 ProSitePatterns Pectinesterase signature 2. 347 356 IPR033131 -
Alju03g0544 513 SUPERFAMILY Pectin lyase-like 200 512 IPR011050 -
Alju03g0544 513 FunFam Pectinesterase 21 172 - -
Alju03g0544 513 SMART PMEI_2 21 169 IPR006501 GO:0004857
Alju03g0544 513 Pfam Pectinesterase 205 499 IPR000070 GO:0030599|GO:0042545
Alju03g0544 513 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 25 172 IPR035513 -
Alju03g0544 513 FunFam Pectinesterase 199 513 - -
Alju03g0544 513 ProSitePatterns Pectinesterase signature 1. 230 249 IPR018040 -
Alju03g0544 513 Gene3D - 199 513 IPR012334 -
Alju03g0544 513 Gene3D Invertase/pectin methylesterase inhibitor family protein 22 172 IPR035513 -
Alju03g0544 513 Pfam Plant invertase/pectin methylesterase inhibitor 25 169 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g0544 Alju-ChrAlju03 23560978 23562716 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g0544 1 513 Carbohydrate Esterase AT2G45220 69.126 0.0 735