Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g0542 ATGAAAATACTCTTTCTCTGGGATCCAAGTGTCGTAATGCTCAAGAAAAAGCTGCATGGACTGATTGTATTGAGCTCTATGAGCACCATCCAGAGACTCAACAAAACCATGGACCCCATCACCAAATGCTCCCAATATGATGCTCAAACATGGCTCAGCACGGCTCTAACCAATCTCGAGACGTGCCAAGCCGGGTTCTATGAGCTTGGGCTCGAAGACTACGTGTTGCCTTTGATGTCCAACAACGTGACTAAGTTGTTGAGCAACACTTTGGCTTTGAACAAAGTTGAATACAAAGAGCCAAGTTATAAAGATGGGTTTCCGACATGGGTTAAGCCTGGTGATAGGAAGTTGTTGCAGTCTTCTTCTTCATCTTCTAGGGCTAAAGTGGTTGTGGCTAAAGATGGATCTGCAAAATACACAACTATAAGTGCAGCTATAAATGCAGCACTAAAGAGCAGTAGTGGGAGATATGTGATATACGTGAAGGCTGGAATTTACAACGAACAGATAGAGATAAAGGTAAAGAATATAATGTTGGTGGGAGATGGTATTGGGAAGACTATAATCACAGGAAGCAAAAGTGTTGGAGGAGGGACAACAACTTTTCGTTCAGCCACTGTTGGTATGTCAAAAGTCATCAAATTTTAA 651 0.4224 MKILFLWDPSVVMLKKKLHGLIVLSSMSTIQRLNKTMDPITKCSQYDAQTWLSTALTNLETCQAGFYELGLEDYVLPLMSNNVTKLLSNTLALNKVEYKEPSYKDGFPTWVKPGDRKLLQSSSSSSRAKVVVAKDGSAKYTTISAAINAALKSSSGRYVIYVKAGIYNEQIEIKVKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVGMSKVIKF 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g0542 216 Pfam Pectinesterase 130 210 IPR000070 GO:0030599|GO:0042545
Alju03g0542 216 Pfam Plant invertase/pectin methylesterase inhibitor 29 93 IPR006501 GO:0004857
Alju03g0542 216 PANTHER PECTINESTERASE 28 211 - -
Alju03g0542 216 NCBIfam pectinesterase inhibitor domain 29 95 IPR006501 GO:0004857
Alju03g0542 216 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 96 IPR035513 -
Alju03g0542 216 Gene3D - 123 213 IPR012334 -
Alju03g0542 216 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 96 IPR035513 -
Alju03g0542 216 ProSitePatterns Pectinesterase signature 1. 154 173 IPR018040 -
Alju03g0542 216 SUPERFAMILY Pectin lyase-like 124 210 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g0542 Alju-ChrAlju03 23429231 23429881 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g0542 29 208 Carbohydrate Esterase AT2G45220 69.613 1.23e-81 250