Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g0488 ATGGAATCTGGAGGCTTTCATGGCTACCGCAAGCTCCCTAACACTTCTTCTCCAGGGCTGAAGTTATCTTCATCAGTATCGGTACGGGAGACGATGAACAACCACAACCACTCATCGTCCTCATCCACCACCGCGGCGGCTGAAGACAATGAATGCACGGTGAGGGAGCAAGACAGGTTCATGCCGATCGCCAATGTCATCAGAATCATGCGGAAGATCCTCCCTCCACACGCCAAGATCTCCGACGATGCCAAGGAGACCATCCAGGAATGCGTGTCTGAGTACATCAGCTTCATCACCGGCGAGGCCAACGAGCGGTGCCAGAGGGAGCAGCGGAAGACCATCACGGCCGAGGACGTGCTGTGGGCCATGAGCAAGCTTGGGTTTGACGACTACATTGAGCCCCTCACCATGTACCTTCATCGGTACCGCGAGATGGAGGGCGACCGGGCCTCCATGCGTGGGGAGCCGCTGGGCAAGCGGGCGGTGGAGCCACCATATGGGGCACCGGCGGGGTTAGGTGCTTTCGTTCAGCCATTTCACGTGGGGCGTCCGAATGGGTACTTTGAAGCCATGGGAGGGTACATGAAGGAGCATGCGCAGAATAATAATGGAGGAGGAGGGTCTTCTTCACAAGCTGAACCAAATGGTCAATACAAGTGA 663 0.5656 MESGGFHGYRKLPNTSSPGLKLSSSVSVRETMNNHNHSSSSSTTAAAEDNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYREMEGDRASMRGEPLGKRAVEPPYGAPAGLGAFVQPFHVGRPNGYFEAMGGYMKEHAQNNNGGGGSSSQAEPNGQYK 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g0488 220 MobiDBLite consensus disorder prediction 1 53 - -
Alju03g0488 220 MobiDBLite consensus disorder prediction 200 220 - -
Alju03g0488 220 MobiDBLite consensus disorder prediction 16 50 - -
Alju03g0488 220 Gene3D Histone, subunit A 46 164 IPR009072 GO:0046982
Alju03g0488 220 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 60 124 IPR003958 -
Alju03g0488 220 FunFam Nuclear transcription factor Y subunit B-6 49 164 - -
Alju03g0488 220 SUPERFAMILY Histone-fold 57 156 IPR009072 GO:0046982
Alju03g0488 220 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 36 197 IPR027113 GO:0001228|GO:0006355|GO:0016602
Alju03g0488 220 ProSitePatterns NF-YB/HAP3 subunit signature. 91 107 IPR003956 GO:0005634|GO:0006355|GO:0043565
Alju03g0488 220 MobiDBLite consensus disorder prediction 202 220 - -
Alju03g0488 220 PRINTS CCAAT-binding transcription factor subunit A signature 107 125 - -
Alju03g0488 220 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
Alju03g0488 220 PRINTS CCAAT-binding transcription factor subunit A signature 126 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g0488 Alju-ChrAlju03 19276631 19280332 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g0488 1 195 CCAAT-HAP3 Transcription Factor Family AT5G47670 61.809 1.68e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Alju03g0488 CBFD_NFYB_HMF 6.2e-26 CL0012