Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g0446 ATGTGTTCGAAGAAGTTGAGGTGCATTGACGAATGCTTGTTTAAAGACTTGTGGGACAAGCATTCGTTGCAGGAACAGCATCGGTGGATTTCCGTTTTCTTCTTAAGACATTATAGAAGAATCTCCTTTCTGAATTGGCGAGTCTTAGGGTTCAATTGGGCCATCTTTCGTGGTACAGCTATGCAGAGTCAGCTTGTGTGTAATGGGTGCCGGAGTGTTTTGCTTTACCCTAGGGGGGCCACTAATGTTTGTTGTGCATTGTGCAACACAATTACCTCTGTTCCTCCTCGTGGGATGGAAATGTCTCAACTTTATTGTGGAAGATGTAGGACATTGCTGATGTACACACGTGGAGCTACAAGTGTTAGATGTTCCTGCTGTCATACGGTGAACCTTGCACCGGGTGCAATAGCATCTAGCCACTTTGCCCATATACACTGTGTGAACTGCCAGACAACTCTGATGTATCCGTATGGAGCTCCATCAGTCAAATGTGCAGTTTGTCAGTATATAACAGATACCAGTAGGACCAATGGAAGGGTTCCCAATACTGTCCACAGGCCAAATGGGACTACCAACTCTGGAACAATACCTTCTACTTCAACATCAATGCCCCATTCTCAAGGCCAAACTGTTGTGGTAGAAAATCCCATGTCTGTTGATGCAAGTGGGAAATTGGTGAGCAATGTTGTTGTTGGCGTAACAACTGAGAAGTAA 717 0.4491 MCSKKLRCIDECLFKDLWDKHSLQEQHRWISVFFLRHYRRISFLNWRVLGFNWAIFRGTAMQSQLVCNGCRSVLLYPRGATNVCCALCNTITSVPPRGMEMSQLYCGRCRTLLMYTRGATSVRCSCCHTVNLAPGAIASSHFAHIHCVNCQTTLMYPYGAPSVKCAVCQYITDTSRTNGRVPNTVHRPNGTTNSGTIPSTSTSMPHSQGQTVVVENPMSVDASGKLVSNVVVGVTTEK 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g0446 238 MobiDBLite consensus disorder prediction 179 207 - -
Alju03g0446 238 NCBIfam zinc finger domain, LSD1 subclass 64 94 IPR005735 -
Alju03g0446 238 NCBIfam zinc finger domain, LSD1 subclass 103 132 IPR005735 -
Alju03g0446 238 NCBIfam zinc finger domain, LSD1 subclass 144 172 IPR005735 -
Alju03g0446 238 PANTHER PROTEIN LSD1 62 237 IPR040319 -
Alju03g0446 238 Pfam LSD1 zinc finger 106 130 IPR005735 -
Alju03g0446 238 Pfam LSD1 zinc finger 147 171 IPR005735 -
Alju03g0446 238 Pfam LSD1 zinc finger 67 91 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g0446 Alju-ChrAlju03 15890926 15898980 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Alju03g0446 zf-LSD1 4.3e-11 No_clan