Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g0303 ATGGTGTCGGGTTCTGGAATCTGCACCAAGAGGGTGGTGGTGGATGCCCGCCACCACATGCTAGGCCGTCTTGCTTCGATCGTGGCCAAAGAGTTGCTTAACGGCCAGAAGGTCGTCGTGGTGCGGTGCGACGAGATATGCATCTCCGGCGGCTTGGTCCGCCAGAAGATGAAGTACATGAGATTCCTTCGTAAGCGCATGAACACCAAACCTTCTCACGGTCCAATCCACTTCCGTGCTCCTTCTAAGATTTTCTGGCGCACTGTTCGTGGAATGATACCACATAAGACAAAGCGTGGAGCAGCTGCACTTGCTCGATTGAAGGTATATGAGGGCATACCTCCCCCATATGACAAGATGAAGAGGATGGTTGTCCCTGATGCCCTGAAGGTCTTGAGGCTTCAGAAAGGACACAAGTTCTGTTTGGTTGGTAAATTGTCGTCAGAAGTTGGATGGAACTATTATGATACCATTAGGGAATTGGAAAAGAAGAGAAAAGAGAGAGCACAAGTGGTTTATGAGAGGAAGAAGCAACTGAACAAATTAAGGTCAAAAGCTACGAAGATTGCTGAGGAAAAGCTTGGTTCCCAACTGGACATCCTTGATCCAGTTAAACGTTTGTTTTCAGAGGGAATTTCCTGTGATGGAACTGTATATGAGAGCGGTTATGGTAATGGATCCTATGAGGGCAAGGGGGGTGTCTCTTTCGGGGTTCTTGTTTTCCTCAGCCATGGTGGAGACGGCGTCGGATACGACATAGGCGAAGAAGAGGACGGCTTCAGCTTCGAAGATGCCGTGAGTTCCAAAGGAGATGAAGGTGGAGTAGTTGTTGGGGTTGGCTTTGGTCAGGCCTGCGATGATGATGAAGAGAAGGACGGATATGTGAACTATGGAGGCAATGTAGTTGAGGCGGGAGCAGGCGTTCGTGCTGAAGATGGCGAGGAGGGCGACCGCGACAAGGACAGTGACAACCATTGGGTCGAGTTGGTTGTAGCCGCTGGTGAGGCCGTGGGCGATTATGAAGAACTTGTCGGAGGGTTGGTTGCAGCAGGTGGCAAAGCGAAGCAGCCACCTGATGATGAAGGTCATGCGTTAATGTTTATGCAAGCTCGCTTTCAACGATATCGGTAG 1131 0.5031 MVSGSGICTKRVVVDARHHMLGRLASIVAKELLNGQKVVVVRCDEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGIPPPYDKMKRMVVPDALKVLRLQKGHKFCLVGKLSSEVGWNYYDTIRELEKKRKERAQVVYERKKQLNKLRSKATKIAEEKLGSQLDILDPVKRLFSEGISCDGTVYESGYGNGSYEGKGGVSFGVLVFLSHGGDGVGYDIGEEEDGFSFEDAVSSKGDEGGVVVGVGFGQACDDDEEKDGYVNYGGNVVEAGAGVRAEDGEEGDRDKDSDNHWVELVVAAGEAVGDYEELVGGLVAAGGKAKQPPDDEGHALMFMQARFQRYR 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g0303 376 FunFam 60S ribosomal protein L13a 155 205 - -
Alju03g0303 376 FunFam 60S ribosomal protein L13a-4 8 154 - -
Alju03g0303 376 ProSitePatterns Ribosomal protein L13 signature. 89 112 IPR023563 GO:0003735|GO:0005840|GO:0006412
Alju03g0303 376 Hamap 50S ribosomal protein L13 [rplM]. 11 135 IPR005822 GO:0003735|GO:0005840|GO:0006412
Alju03g0303 376 Pfam Ribosomal protein L13 10 115 IPR005822 GO:0003735|GO:0005840|GO:0006412
Alju03g0303 376 Gene3D - 156 207 - -
Alju03g0303 376 CDD Ribosomal_L13 12 113 IPR005822 GO:0003735|GO:0005840|GO:0006412
Alju03g0303 376 SUPERFAMILY Ribosomal protein L13 12 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Alju03g0303 376 Gene3D Ribosomal protein L13 7 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Alju03g0303 376 NCBIfam 50S ribosomal protein L13 12 154 IPR005755 GO:0003735|GO:0006412|GO:0015934
Alju03g0303 376 PANTHER RIBOSOMAL PROTEIN L13 2 181 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g0303 Alju-ChrAlju03 10545432 10550047 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g0303 1 205 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 89.268 3.15e-137 388