Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g0278 ATGGAACAGTCGAAATTGGCTGCAGAATCTCCCTATAAGGAGATATCTGCCAGATGGGATCCAGATGAAGCATGCTTGCCCCTAATTGATGACGCACCTGTATTTTATCCAACCGCTGAGGAGTTCGGAGACACCCTTGGTTACATAGCAAAGATACGCCCCCTGGCTGAACCCTATGGCATATGTAGGATAGTCCCTCCAACTTGCTGGACTCCACCCTGCCCTCTTAAGGAGAAAGATATTTGGGAAAATGCTAAATTTCCCACCCGCATTCAGCAGATTGACTTGCTTCAGAATAGAGAGCCCATGAGAAAGAAAAACAGGGGAAGGAAACGAAAACGTAGAAGGAACTCTAAAATGACAACCTGTAGGAGACTTGCCAATCCTGATTCAGAAGTTAATGTTGCTTCTGAATCTGATGAAAAATTTGGATTCCAATCAGGACCAGACTTCACACTTAGAGACTTTCAACAATATGCTGCTTTTTTTAAAGAATGCTACTTTGGGACAAAGGATATCAAAGGCGATGCACAAATTAGTGATAATAATTATCAGAAAAGGTGGGAGCCCTCTGTGAAGGAAATTGAAGGTGAATACTGGCGAATAATTGAGCAACCAACTGATGAGGTCGAGGTGTATTATGGAGCTGACCTAGAAACTGGGGCGCTTGGAAGTGGTTTTCCAAAGGCTGATTCCTTAACTAAGAGTGACTTAGATGAGTATGCAATATCTGGCTGGAATCTTAATAACTTCCCACGGCTTCCAGGTTCTGTGCTATGTTTTGAAGGGAGTGACATTTCGGGAGTTCTAGTTCCTTGGCTCTATGTTGGGATGTGTTTTTCATCATTTTGCTGGCATGTTGAGGATCATCACCTTTATTCGCTAAATTATTTGCACTGGGGTGATCCAAAAGTATGGTATGGAGTACCTGGCAGCCATGCTACAGCTTTGGAGGGTGCGATGAGGAAGCATATGCCTGATTTGTTTGAGGATCAACCTAATTTGCTCAATGAACTGGTCACTCAATTATCGCCTTCAATTCTTAAATCTGAGGGAGTGTCTATATTTCGCACCATCCAGCATTCTGGGGAATTTGTGATTACCTTTCCAAGAGCATACCATGCTGGCTTCAATTGTGGTTTCAACTGTGCAGAGGCCGTGAATGTTGCCCCTGTAGATTGGTTACTGCATGGCCAGAATGCTGTTGAACTTTATAGTAAGCAGTGCCGTAAAACATCATTGTCACATGACAAGCTGTTATTAGGATCAGCTCAGGAAGCTATACAAGCCCTTGCAGAGGTCTTTTTTTATGGAAAAGAGACTCCAAAAAATTTGAAATGGAGAAGTGTCTGTGGGAAAGATGGTGTCCTCACGAATGCAATTAAGGCAAGGATAAAGATTGAGGAAGAGCGACTACAGTGTCTTCAAACTCCTATGAAATTGGTGAAAATGGACATAAACTTTGATTTGGATAAGGAAAGAGAATGCTTTGCTTGCTTCTACGATTTGCACCTTTCTGCTGTAGGTTGCCAATGCTCTGTTGATAAATACTCTTGTCTAAGACACTCAAAATCGTTTTGCTCATGTGGGTGTGATGAAAGATTTGTTCTATTTCGTTATACCATAGAGGAGCTAAAAGAGTTGGTTAGAGCATTAGAAGGAGCGCTAGAAGCTATCAAGGTTTGGACAAATAGGACCTCTGGAATGGTTTCTGTAGATGGTGGGGATGTTTGTTTAGATAAGCCATACGTGGGCAGAGGCATGTGCGAAACTAAGATAAATGAAGTGGAAAGTTCATCTTCTTGTGCAAGAATCAAGAAGTCAAAACTAAATGAAGATCCTCATAGTCATGTTTCTTCAGAATTAGTCCAGTCAGACTCTCAAGTGGAAAGTGCACCACATCACATTGTAGATAGTCACAATGGCAATGTTAATGTCAAAAGTTTAGTTATGGATAATGAAATTAAGGTTGCATGGAATTGTTCTATGGGTTTAAATCTTAATGTCATGTCTGATCGAAATGAAAGTTATATCCTTCATATTGCTGATAGCAAAACAAACAAGGGTATTGGTTGTGTTGAAAAAGTCTGTTACCCAGACTCACAAAAGGAACAAGAAGATGTGGTACTTGATGGTGAAGGAAATGTATCAGACATGTTTACTCCAGTGAAGAAAGAATACTCATCGTGTTCTAGGGGAACTTCTAGTAAAGTTGACGCCTGCAAGAGGGATGATCTATTAATGCATCATGACATGGGGTTACTACCTAACAATGAATGTAAAATGGAGGCAATAAACAGTTTCAATACAAACACATCTTTGACAAACCAAAGCTTTCTCATTCAGAAGTTTGCGACATCCATTGAGCCTGTAAGCCTAGGCTCCATTGTGCATGGAAAGCTGTGGTGTAGTAAGCACATGATATATCCAAAAGGATTCAAGAGTCGTGTCAAGTTCTTTAGCATCCTTAATCCATCAAGAATATGTAGCTATGTTTCTGAAGTTGTTGATGGTGGCTTAATTGGACCTCTTTTCAAGGTTAGCATAGAAGAACATCCAAGTGAAAATTTCATGACCATGTCGGCAGAGAAGTGCTGGGACTCAGTTCTGCAGAAAGTAAATCGTGAGATCATCAAGCGCAAAAGCCTAGGGGAAATAAAACTTCCTCCATTGGAGCTTCTGCAAAGCATCAATGGTTTACAAATGTTCGGGTTCCTTTCTCCATCAATTATCCAGGGGATTGAAGCTCTGGATCCCATTCATCAATGCATGGAATACTGGAATCACAAGGAATTAATCTCTTCTGTATCTTCCAGCAGTACAAGTGATGACATTAAGCTTGTGCGCGGCGGTTCAAGCAGCATATCTGATGACCTTGAGACCAAAGTTTTTGGTATCGATATAACAAAGAGGGATGAAGATGATGATAAACCTATAGGGGCAAAACGGGACTCGTTCGAAGGGATGAAACTCGTACTCGAAGGATTGTTGAAGAAAGCGAACCTGGATGAGTTAATCACAATGCAGAAGTTATTGGGGTCTGATCCACAAAGTTCTCAGTGGAGAGTGGAAATTGCGGCTCTGATAGAGGAGATCCAGAAAAGCATGTAG 3111 0.4127 MEQSKLAAESPYKEISARWDPDEACLPLIDDAPVFYPTAEEFGDTLGYIAKIRPLAEPYGICRIVPPTCWTPPCPLKEKDIWENAKFPTRIQQIDLLQNREPMRKKNRGRKRKRRRNSKMTTCRRLANPDSEVNVASESDEKFGFQSGPDFTLRDFQQYAAFFKECYFGTKDIKGDAQISDNNYQKRWEPSVKEIEGEYWRIIEQPTDEVEVYYGADLETGALGSGFPKADSLTKSDLDEYAISGWNLNNFPRLPGSVLCFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHATALEGAMRKHMPDLFEDQPNLLNELVTQLSPSILKSEGVSIFRTIQHSGEFVITFPRAYHAGFNCGFNCAEAVNVAPVDWLLHGQNAVELYSKQCRKTSLSHDKLLLGSAQEAIQALAEVFFYGKETPKNLKWRSVCGKDGVLTNAIKARIKIEEERLQCLQTPMKLVKMDINFDLDKERECFACFYDLHLSAVGCQCSVDKYSCLRHSKSFCSCGCDERFVLFRYTIEELKELVRALEGALEAIKVWTNRTSGMVSVDGGDVCLDKPYVGRGMCETKINEVESSSSCARIKKSKLNEDPHSHVSSELVQSDSQVESAPHHIVDSHNGNVNVKSLVMDNEIKVAWNCSMGLNLNVMSDRNESYILHIADSKTNKGIGCVEKVCYPDSQKEQEDVVLDGEGNVSDMFTPVKKEYSSCSRGTSSKVDACKRDDLLMHHDMGLLPNNECKMEAINSFNTNTSLTNQSFLIQKFATSIEPVSLGSIVHGKLWCSKHMIYPKGFKSRVKFFSILNPSRICSYVSEVVDGGLIGPLFKVSIEEHPSENFMTMSAEKCWDSVLQKVNREIIKRKSLGEIKLPPLELLQSINGLQMFGFLSPSIIQGIEALDPIHQCMEYWNHKELISSVSSSSTSDDIKLVRGGSSSISDDLETKVFGIDITKRDEDDDKPIGAKRDSFEGMKLVLEGLLKKANLDELITMQKLLGSDPQSSQWRVEIAALIEEIQKSM 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g0278 1036 SUPERFAMILY Clavaminate synthase-like 212 429 - -
Alju03g0278 1036 Pfam JmjC domain, hydroxylase 273 389 IPR003347 -
Alju03g0278 1036 ProSiteProfiles JmjN domain profile. 32 73 IPR003349 -
Alju03g0278 1036 ProSiteProfiles JmjC domain profile. 240 406 IPR003347 -
Alju03g0278 1036 Pfam jmjN domain 33 66 IPR003349 -
Alju03g0278 1036 SMART JmjN_1 31 72 IPR003349 -
Alju03g0278 1036 SMART cupin_9 240 406 IPR003347 -
Alju03g0278 1036 MobiDBLite consensus disorder prediction 99 121 - -
Alju03g0278 1036 Gene3D - 785 924 - -
Alju03g0278 1036 Gene3D Cupin 17 390 - -
Alju03g0278 1036 SMART fyrc_3 844 932 IPR003889 GO:0005634
Alju03g0278 1036 ProSiteProfiles FYR domain FYRN motif profile. 780 838 IPR003888 GO:0005634
Alju03g0278 1036 SMART fyrn_3 794 838 IPR003888 GO:0005634
Alju03g0278 1036 PANTHER LYSINE-SPECIFIC DEMETHYLASE 29 771 - -
Alju03g0278 1036 MobiDBLite consensus disorder prediction 104 121 - -
Alju03g0278 1036 Pfam F/Y rich C-terminus 842 928 IPR003889 GO:0005634
Alju03g0278 1036 Pfam F/Y-rich N-terminus 791 835 IPR003888 GO:0005634
Alju03g0278 1036 ProSiteProfiles FYR domain FYRC motif profile. 840 930 IPR003889 GO:0005634
Alju03g0278 1036 FunFam Putative lysine-specific demethylase JMJ16 786 924 - -
Alju03g0278 1036 Pfam C5HC2 zinc finger 496 548 IPR004198 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g0278 Alju-ChrAlju03 9220802 9227760 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g0278 782 968 JUMONJI Transcription Factor Family AT1G30810 49.198 2.53e-51 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Alju03g0278 JmjC 7.5e-44 CL0029