Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g0273 ATGGCGATATCTTCGGGAGAGGGACCAAGCAGGAACAACACCTCTCGAATTAGAAAGCGACCTAGGATTACAATTCGCTACAGAAGTAGAGAATCTGATGAAGAACGACATGTCGTAGAGGCCCATGGTGGGAGCACCAACCACGAAGATCGTGAACGCGACGCTGGAGAAGGAAGGGAACGGCAGAATGAAGAGATTGAAGAAGAAGCAGAAGACGTCGTCGCCGCCGAAGAAGAAGAATCAGAAAATGTAATCCAAGTGGTTGACGTCGAAGAGTCATTCTGTGGAGAGAAAGTCGCTTCTGGAGAAGACGGTGGTGGTGGTGGTAGGGATGGGTCTATTCCCGTGACTCTCACCGATCCTGCTTTTCTTAATTGCTGTATTTGCTGTCAGCCTTTAACTATTCCTGTATTTCAGTGTGAGAATGGACATATTGCATGCTCTACCTGCTGTGTCCGACTTGCCCATAAGTGTTATTCGTGCCTGGCACCCATTGGCAACATCCGTTGCCGAACCATTGAGAAAGTGTTGGAATCTCTTAAAATATCATGCTGCAATGCAAGAAATGGCTGTATAGAGAAAATTTCTCACATCAACAGAAGTATCCATGAGAAAGGTTGCATCTACACTCCATGTTGGTGCCCTATTGATGGTTGCCAGTTCACTGCTCCAAGCAAGAAGTTGTCCCAGCACATCAACCATGAGCATCATGGAAGCTTTATAAACTTTTATTATGATAGCTTCCTCTATCTCACATTGGGGCTCAACCAGAAAGCCGTTGTTCTTAAAGAGGTGACTGACTCTAATATATTTATTATAAAAAACGACCTGGAGTATTTGGGGAATGTGATCAAAGTCTTTCACATTGGCCCTAAGTCAACGGCTGAGACATATCGGTATGATCTTTATGCTAGATCAGAGGGATGCTGTCTGAAACTAGATTCTTTTGTCAATCATACCCTTGGCAACAATTTTCCTGCTACAACAAAGTTCCTTCTGGTTCCAATTGATTTTCACGGTCCTTCTCCAGAAGTCAATATAGAAATTCGCATATATAAGGTGTAA 1065 0.4385 MAISSGEGPSRNNTSRIRKRPRITIRYRSRESDEERHVVEAHGGSTNHEDRERDAGEGRERQNEEIEEEAEDVVAAEEEESENVIQVVDVEESFCGEKVASGEDGGGGGRDGSIPVTLTDPAFLNCCICCQPLTIPVFQCENGHIACSTCCVRLAHKCYSCLAPIGNIRCRTIEKVLESLKISCCNARNGCIEKISHINRSIHEKGCIYTPCWCPIDGCQFTAPSKKLSQHINHEHHGSFINFYYDSFLYLTLGLNQKAVVLKEVTDSNIFIIKNDLEYLGNVIKVFHIGPKSTAETYRYDLYARSEGCCLKLDSFVNHTLGNNFPATTKFLLVPIDFHGPSPEVNIEIRIYKV 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g0273 354 MobiDBLite consensus disorder prediction 64 82 - -
Alju03g0273 354 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 62 353 IPR044286 -
Alju03g0273 354 Pfam Seven in absentia protein family 168 306 IPR018121 GO:0005737|GO:0006511|GO:0007275
Alju03g0273 354 Coils Coil 59 83 - -
Alju03g0273 354 CDD RING-HC_SIAHs 124 161 - -
Alju03g0273 354 MobiDBLite consensus disorder prediction 1 82 - -
Alju03g0273 354 MobiDBLite consensus disorder prediction 26 63 - -
Alju03g0273 354 SUPERFAMILY TRAF domain-like 179 337 - -
Alju03g0273 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 232 IPR013083 -
Alju03g0273 354 ProSiteProfiles Zinc finger SIAH-type profile. 179 237 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g0273 Alju-ChrAlju03 8953089 8955976 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g0273 75 236 C3H Transcription Factor Family AT2G41980 30.488 8.20e-18 81.3