Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g0262 ATGCCAAGTTTAAACAAACTGATATGCATTCCGTCAAATATATTCCTACGATTCTGGACCACGATGGCTATGAGCGATGTCCGGTCGCGTCTGAAACCTAACCTTCTGCACACCCTCCTATGCTTTTTGTTGATCTATATATGTAAATCTGTATTGTTTAATTCGTTTGGGTTGTGCTGTGCAACTTCGGTTACTCAATGCATTCTTTTGTTTTGGGAGAAGATTGAACCTGAGCGTTTGAAATTTAAGGCATTCGTGATGGGTGCTCCTAAGCAGAAGTGGACACAAGAAGAAGAAGCAGCACTAAAAGCTGGAGTTGTTAAGCATGGGGTTGGAAAATGGCGCACAATACTTAAGGATCCAGAGTTTAGTAGTGTCTTGTATCTGCGGTCTAATGTAGATCTTAAGGATAAATGGAGAAATCTGAGCGTAATGGCAAATGGATGGAGCTCCCGGGACAAGTCTAGGTTAGCTGTTAGAAGGGCACATCAGATCCCAAAACAAGATGAAAATGCTATGAATGCCCCTTCTGGTGTTCCAAGTGATGAAGAACTTACGGATTCCAGGGCTCCTCAAGTTCCTAGAGACTTGCTGCAGATTCCTGGTCCCAAGAGGACTATTGTAAGATTGGATAGCCTTATAATGGAAGCAATAGCTAGTTTGAGGGAGCCTGGCGGTTCCAACAAGACAAATATTGCAGCTTACATAGAGGACCAATATGGGGCACCTCCAGATTTCAGAAGGTTGTTGTCGACAAAACTGAAATCATTGACAGCAAGTGGAAAACTGATAAAGGTGAAACGAAAGTATAGGATTCCTCCTCCTCCGACATATCCAGACCGGAGAAGAAACTCATCTTTGTTATTGACAGATGGAAGGCAGAGAATCCCTATGAAGATAGACAAAGATGAGGCCAATGTCATCACAAAGTCTCAGATAGATTTAGAACTAGCAAAGATAAGGTCAATGACAGCACAAGAGGCAGCTGCAGTTGCTGCTCGAGCAGTTGCAGAAGCAGAAGCTGCCATAGCAGAAGCTGAAGAAGCAGCTAAGGAGGCAGAGGCTGCTGAAGCTGATGCAGAGGCAGCACAAGCTTTTGCAGATGCTGCAATGAAGACACTAAATGGAAGAAACACCCCAAAATTGAGGCACTCCGTAGAGCTGATGCGAGCTTGA 1176 0.4413 MPSLNKLICIPSNIFLRFWTTMAMSDVRSRLKPNLLHTLLCFLLIYICKSVLFNSFGLCCATSVTQCILLFWEKIEPERLKFKAFVMGAPKQKWTQEEEAALKAGVVKHGVGKWRTILKDPEFSSVLYLRSNVDLKDKWRNLSVMANGWSSRDKSRLAVRRAHQIPKQDENAMNAPSGVPSDEELTDSRAPQVPRDLLQIPGPKRTIVRLDSLIMEAIASLREPGGSNKTNIAAYIEDQYGAPPDFRRLLSTKLKSLTASGKLIKVKRKYRIPPPPTYPDRRRNSSLLLTDGRQRIPMKIDKDEANVITKSQIDLELAKIRSMTAQEAAAVAARAVAEAEAAIAEAEEAAKEAEAAEADAEAAQAFADAAMKTLNGRNTPKLRHSVELMRA 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g0262 391 FunFam Telomere repeat-binding factor 1 88 144 - -
Alju03g0262 391 Gene3D - 94 175 - -
Alju03g0262 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 119 IPR017930 -
Alju03g0262 391 FunFam Telomere repeat-binding factor 1 94 172 - -
Alju03g0262 391 MobiDBLite consensus disorder prediction 164 197 - -
Alju03g0262 391 SMART h15plus2 204 269 IPR005818 GO:0000786|GO:0003677|GO:0006334
Alju03g0262 391 SMART sant 90 145 IPR001005 -
Alju03g0262 391 SUPERFAMILY Homeodomain-like 88 156 IPR009057 -
Alju03g0262 391 ProSiteProfiles Myb-like domain profile. 91 143 IPR001005 -
Alju03g0262 391 Pfam linker histone H1 and H5 family 211 267 IPR005818 GO:0000786|GO:0003677|GO:0006334
Alju03g0262 391 CDD SANT_TRF 92 142 - -
Alju03g0262 391 FunFam Telomere repeat-binding factor 1 204 284 - -
Alju03g0262 391 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 206 274 IPR005818 GO:0000786|GO:0003677|GO:0006334
Alju03g0262 391 Gene3D - 205 281 IPR036388 -
Alju03g0262 391 PANTHER SINGLE MYB HISTONE 4 87 378 IPR044597 GO:0003691
Alju03g0262 391 Pfam Myb-like DNA-binding domain 91 142 IPR001005 -
Alju03g0262 391 Coils Coil 329 366 - -
Alju03g0262 391 SUPERFAMILY "Winged helix" DNA-binding domain 204 283 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g0262 Alju-ChrAlju03 8484862 8491993 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g0262 87 382 Single Myb Histone (SMH) Gene Family AT1G49950 66.667 2.99e-102 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Alju03g0262 Linker_histone 1e-07 CL0123