Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g0064 ATGGATCTTTCTTTGAGTGTTGGAAATGGCTCTAGTGATGAGCAAAACACTGCAAGCTCTCATCGAACTGGAAAGAGGAGGTCTTCTCATCGTCACACTCCTCTACAGATCCAGAGACTCGAAGAGTTTTTCAATAAGTGTCCACACCCTGATGAGGAACAACGCAGAGATTTAAGCAAGGAGCTTGGACTTGAACCCAGACAAATCAAGTTCTGGTTTCAGAACAAGAGAACTCAAACCAAGACACTAGGCGAGAGGATAGATAACAATGCTCTTCGTGCTGAGAATGAAAGGATTCAGTCAGAGAACTCAGCAATCAGAGAGATTCTCAAGAGTAGTGTGTCATGCCCTGCTTGTGGTGGTCCTTCCTATGGAGATGAAGAACACAAATTTACTATGCAAAAGCTGCTCCATGAGAATGCCTATCTCAGACTAGAGTATGAAAAAGCAACAAGGCTTCTGGCGGACTATGCTGGGAAACCTCTGATGATCCAAAAGAATTTCCTAACCCTAGGAACTCCATCAACGTCCTCGTCATCGTCGTCATCAGAATATGGCTTGTCTATGTCCATGTCCATGTCCGGTGACAACAGTTACTTGTTGCCAAAACAAGGAAGCAACAAGGTCGTAATGTGGGAGACGGCTGTTTGTGCCATAGAAGACCTGATGAGGCTTTTGCGTGTGGACGCGCCGCTCTGGATCAGCCCTGAAGCATCCGCTGTGGACCACGTTGACCATGGCTTCTTCTTCCTCCCAAACCCCGAAACCTACGAAAGGATATTCCCTAAGGCTCATCATCTCCGCAAGAGGCTTACCAAGAACGCTCGTGTCGAATGCTCTAAAGCTTCTTCTGTCGTCCCTATGCCTCCCTTGCAGTTGGTTGACATGTTTCTCGACTCTGACAAATGGGTTAATCTGTTCCCAACAATTGTTGGCAAAGCAAGCACAGTAAAAGTGCTTGAACCTGGTGCGCTTGGGAGCAGGAATGGAGCCTTACAACTGATGTACGAAGAACTTCACATGCTTACGCCTTTGGTGCCACCTCGTGAATTTCTGTTCCTTCGACACTGTTTCCAACCAGACCAGACAACATGGGTGATAGGTGATGTGTCGTTTGTTCCCCTTGAAGACATTGGTGTTCCTTATTCTTCCTCCTTCTGGAAGCTTCCTTCTGGTTGCATGATTCAAGAACTCCCCAATGGCTTCTCCAAGGTTACATGGGTGGAACATGTGGAAGTGGAGCATGAGAGCCTAATAGTGCACATGCTATACAGAAACCTTGTGTTTAGCAGCGTTGCTTATGGAGCTCAACGATGGGTGGTGGCACTTGAGAGAATGTGTGAGAGAATCGGAAGCTTCTTAAGCCCTCACATTCCTTATGAGGAAGCAACTTCAGTGTTGATGAGAATACCAGAGGGAAGAAGCAGCGTGATGAGGCTAGGGCAACGAATGATGAAGAGCTTCTGTAGAGTGATAAGCATGAAGAGTGCTATTAATGGTGGAGATATAAGTGAAGAGAATATTAATATTAATAATATTAATAATAACAATAATGAGATTGGTATCAGACTGTTCAGTCGCAACAACTTTGAGAGAGGTGAGCCTCATGGAATTACTCTCACTGCTGCTGTTCCTATGTGGCTTCCTCTTCCTCCCGACCATGTCTTCTACTACCTTCGCGACGTCTCTCGCCGGTTTCAGTGGGATGTTCTGGTCACTGAAAATTTAGAGCAAGAAGTTGTTCGCATCTCAACTGGAGCTCATCATGCAAGCTATATATCAGTTATCCAGGCATACAGTGAGAGTGACGACGTTGCGATTGTTCAAGAAACTTGTGTTGAACCAATGGGATGCGTCCTTGTGTACGCTCCGGTGGATAAGGTGGCGATGAAGGCGGTGATGCAAGGTGGGGATTCGACTGACTTGACGATGCTGCCGTCCGGCTTTGTGGTCACGAGGGACAGCATGGGAATACCCAACGGCGGCGGCTGTGGCGGTTCTTCTTCCTGCAGCGGTGGTTCAATACTGACGATGACTTTACAGATTCTGGTGAGCGACGACAGCATGGACAGGAGGAGCTTGAGCATGAAGAGTGTGGACACCGTGAACCACCTCGTGGCCACCACATTGGACAAGATCAAGTTTGCTCTCATGAACAATAATTAG 2166 0.4709 MDLSLSVGNGSSDEQNTASSHRTGKRRSSHRHTPLQIQRLEEFFNKCPHPDEEQRRDLSKELGLEPRQIKFWFQNKRTQTKTLGERIDNNALRAENERIQSENSAIREILKSSVSCPACGGPSYGDEEHKFTMQKLLHENAYLRLEYEKATRLLADYAGKPLMIQKNFLTLGTPSTSSSSSSSEYGLSMSMSMSGDNSYLLPKQGSNKVVMWETAVCAIEDLMRLLRVDAPLWISPEASAVDHVDHGFFFLPNPETYERIFPKAHHLRKRLTKNARVECSKASSVVPMPPLQLVDMFLDSDKWVNLFPTIVGKASTVKVLEPGALGSRNGALQLMYEELHMLTPLVPPREFLFLRHCFQPDQTTWVIGDVSFVPLEDIGVPYSSSFWKLPSGCMIQELPNGFSKVTWVEHVEVEHESLIVHMLYRNLVFSSVAYGAQRWVVALERMCERIGSFLSPHIPYEEATSVLMRIPEGRSSVMRLGQRMMKSFCRVISMKSAINGGDISEENININNINNNNNEIGIRLFSRNNFERGEPHGITLTAAVPMWLPLPPDHVFYYLRDVSRRFQWDVLVTENLEQEVVRISTGAHHASYISVIQAYSESDDVAIVQETCVEPMGCVLVYAPVDKVAMKAVMQGGDSTDLTMLPSGFVVTRDSMGIPNGGGCGGSSSCSGGSILTMTLQILVSDDSMDRRSLSMKSVDTVNHLVATTLDKIKFALMNNN 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g0064 721 Pfam Homeodomain 26 81 IPR001356 GO:0003677
Alju03g0064 721 Coils Coil 89 109 - -
Alju03g0064 721 FunFam Homeobox-leucine zipper protein HDG1 12 99 - -
Alju03g0064 721 SMART START_1 213 449 IPR002913 GO:0008289
Alju03g0064 721 Pfam START domain 256 449 IPR002913 GO:0008289
Alju03g0064 721 SMART HOX_1 25 87 IPR001356 GO:0003677
Alju03g0064 721 ProSitePatterns 'Homeobox' domain signature. 58 81 IPR017970 GO:0000981|GO:0006355
Alju03g0064 721 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 25 717 IPR042160 -
Alju03g0064 721 CDD homeodomain 26 81 IPR001356 GO:0003677
Alju03g0064 721 Gene3D - 265 445 IPR023393 -
Alju03g0064 721 ProSiteProfiles 'Homeobox' domain profile. 23 83 IPR001356 GO:0003677
Alju03g0064 721 Gene3D - 5 82 - -
Alju03g0064 721 MobiDBLite consensus disorder prediction 1 18 - -
Alju03g0064 721 SUPERFAMILY Bet v1-like 277 451 - -
Alju03g0064 721 ProSiteProfiles START domain profile. 204 452 IPR002913 GO:0008289
Alju03g0064 721 SUPERFAMILY Homeodomain-like 11 82 IPR009057 -
Alju03g0064 721 CDD START_ArGLABRA2_like 208 448 - -
Alju03g0064 721 MobiDBLite consensus disorder prediction 1 35 - -
Alju03g0064 721 SUPERFAMILY Bet v1-like 471 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g0064 Alju-ChrAlju03 1322268 1329171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g0064 25 717 Homeobox Transcription Factor Family AT1G73360 40.417 2.01e-167 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Alju03g0064 START 2.6e-32 CL0209