Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g0056 ATGGCTTTACCAGTGAGGATCGTTCTGTTACTCTTCTGCTTCTCGTCTGTTTTACTTATTCTCTGTCATGGCAAGTCTGATTCAGAGGGTGATGATTCATCTTCCACGTTCAGGTTGCTTTTGGAGGTGAAGAAGTCGTTCATGGAGGATCCAGAAAATGTTTTGGCTGATTGGTCTGAGAACAACACGGATTACTGTAGCTGGAGAGGGATTAGTTGTGGATTGAACTCTGTGTTAGTGGGACTTAACCTTTCTGACTCGTCACTCACTGGGTCAATCTCTCCCTCACTCGGTCTCTTACGTAACCTGCTCCAACTTGATCTTTCTTCTAACCGCCTTACTGGTCCTATCCCACCTGCTCTCTCGAACCTCTCTTCTTTGGAGTTTCTGCTTCTCTTCTCTAACCAACTCACTGGTCATATCCCCTCTGAGCTCGGCTCGCTCACGAGTCTCCGAGTCTTGCGAATTGGAGACAACCCGTTGACAGGTCCCATTCCTTCGTCCTTTGGGAACTTAGGTAGTCTCGTGACTCTTGGTTTGGCCTCTAGTAGTCTCACTGGATCTATTCCATCGCAACTCGGACGACTCAACCAGCTTCAGAATCTTATTCTACAAGAGAATGAACTCACAGGTCCGGTTCCACCCGAGTTAGGAAACTGTTCGAACCTCACCGTTTTCACTGCTGCAAACAATGGACTCAATGGGACTCTTCCGAGTGAACTTGGTGGCCTTGAGAATCTTAATCTTTTCAACCTCGCCAACAATAGTATAACAGGGGAGATTCCGAGTGAACTCGGGAATCTGAGTCAGCTTGGTTATTTGAACCTCATGGGCAACCAACTCGAGGGTCGTATTCCATTGTCTTTAGCTCGACTGGGTAATCTTAAAAATCTGGACCTGTCGTTCAACAAGCTGCTTGGTGGGACTCCTGAAGAACTAGGAAACATGGGTCAGCTGCAGTACATGGTTCTGTCTGGGAATCATCTCTCAGGTATCATCCCAAGAGGTTTATGTTCCAACTTGACGAGTTTGGAGCATTTAATGTTGTCGGATACTGCACTGTCTGGTGAGATTCCCAGTGAGTTAAGCCAGTGTCAGTCCATGAAACAACTTGATTTGTCAAACAATTCCTTAAATGGATCAATACCCATTGAACTTTATGAAATGACTGGGTTAACTGATTTGTTGCTCAATAACAACAGCTTTGTTGGCTCAATCTCTCCTTTCATAGGAAATCTCAGTAACCTGGAGATACTTGCATTGTTCCACAACAATTTACAGGGTTCTCTCCCAAGAGAGATTGGCATGCTGGCAAAGTTGGAAATACTGTTTTTATATGATAATCAATTTTCAGGGGAGATTCCTATGGAGATTGGTAATTGTTCAAGCTTGCAGATGATTGATTTCTTCGGAAACAAGTTTGGTGGGGAAGTTCCCATCACTATTGGAAGGCTTGAGCATTTGAATTTCCTTCATCTCAGACAGAACCAGCTTGTGGGAGAGATTCCAGCCACTTTGGGGAACTGTCATAACCTAACTATTCTTGATTTAGCAGACAATTATCTCTCTGGTGGGATTCCTTCAACGTTTGGATTGCTGAAAGATTTGGAGCAACTCATGCTTTATAACAATTCACTTGAAGGCAATCTCCCTCACCAACTGATAAATCTGAAGAATCTGACAAGGGTGAATCTTTCAAAGAACAGATTGAATGGTAGTTTATCTGCACTATGTAGCTCTAGGAATTTTCTGTCTTTTGATGTCACTAACAATGCATTTGATGGTGAAATTCCACCCCAGCTTGGAAATTCACATTCTCTTGAGAGGCTGAGATTAGGAAAGAACCACGTTTCTGGTGAAATACCAAGGACATTGGGGAAAATTGAAGAGCTTTCATTGTTAGACCTGTCTGAAAATTCTCTCACTGGACCAATCCCAGCAGAGATTTCCTTGTGCAAGAAGCTAGCTCATATAGATTTGAACAATAATATGCTATCTGGGCCAATTCCCTCCTGGCTTGGAAGCTTGCCTCTGTTGGGAGAGCTTAAGCTATCTTTCAATCACTTTTCTGGGAATCTTCCATCAGAGCTATTCACTTGTTCTAAGTTGCTAGTTCTCTCCCTAAACAGCAACTCTCTTAATGGAAGTATTCCTGATGATATAGGCAATCTCACATCCCTTAATAGCCTCAATGTTGAGCAAAACAACTTCTCTGGACCGGTCCCTCCGGCTATCGGTAAGTTAAGCAAGCTTTACGAGCTTAGAATGGCCAGGAACAGCTTTAATGGTGAGATTCCAAGTGAGCTTGGGAGGCTGCAGAATCTTCAAAGCATGTTAGACCTCAGTTACAACAATCTCTCCGGTGAAATCCCACCTTTGCTTGGGACACTGGCAAAGTTGGAAGAGCTTGATCTTTCTCACAATCAACTCACAGGACAAGTCCCTCTTCAAGTTGGTGAAATGAGCAGCTTGGGGAAGCTTGATCTTTCTTACAATAACCTTGAAGGTGTGTTAGATGAGCAATTTTCCCATTGGCCACCTAAGGCATTTGAAGGTAATTCACGCCTTTGTGGAAGCCCTCTTAAACACTGTGATACCGACGGTTCGAGAAATCACCTGCTAGGCCTGAGTAAAACATCACTAGTGATAGTCTCAGCTCTTTCAACATTAGCAGCAGTTGCACTAGCAATACTTGCAGTAAGAATGTTCATGAAGAACAAGCAAGAATTTCTCAGAAAAGGCAGCCAAGTGAACTATGTTTACTCCTCATCCTCTTCATCATCACAAGCACAGCGAAGGCCACTCTTCCGGTACAATAGGGCGGTGAAGCAAGACATAAGGTGGGAGGATATCATGGAGGCAACTGAAAATCTAAGCGATGAGTTCATAATCGGTACGGGAGGGTCCGGGACAATCTACAGAGCAGAATTCCCATCAGGAGATACGGTTGCAGTGAAGAAAATCTCAGGAAAAGATGACTTTATGCAGAACAAGAGCTTCGTGAGAGAAGTGAAGACTCTTGGGAGGATTAGGCATAGACATTTAGTGAAGCTGTTGGGTTATTGCAGCAACAAGAACAAAGGAGAAGGATGGAATCTGCTGATATATGAGTTTATGGAGAATGGGAGTGTGTGGGATTGGTTACATGGGAAACCGGAAAAGACCAGAAGAATCCTTGATTGGGAAGCGAGATTCAAAATTGCAGTGGGATTAGCTAGAGGAGTGGAATATTTGCATCATGACTGTGTGCCAAAGATCATCCACAGAGACATCAAATCCAGCAATGTTTTGTTGGATTCCAAAATGGAGGCTCACTTGGGAGACTTTGGATTGGCAAAAGAACTCAACATTGACAACTCCAACACTGAGTCTAACTCTTGGTTTGCTGGGTCCTTTGGCTACATTGCTCCAGAGTGTGCATATTCATTGAAGGCAACGGAGAAGAGTGATGTGTACAGTATGGGGATAGTGTTGATGGAGCTGGTGAGTGGGAAGATGCCAACAGACGAAGCATTTGGAGGAGATATGGATATGGTGAGATGGGTTGAGATGAACATTGAGATGCACTCTCAGGATTTGATAGATCCTCACCTCATGCCTCTGCCGCCAGCTCAGCAGTTTGCTGCATTCCAAGTCCTTGAGGTTGCCTTGCACTGCACCAAAACGACGCCGCATCTGAGACCGTCTTCCCGCCAAGTCTGTGATCTTCTCCTTCATGTCTTCAGCAACAGAGTGCTTGACTTTGACAAGATGAATTTGAGCCGCCACGAGTGA 3774 0.4433 MALPVRIVLLLFCFSSVLLILCHGKSDSEGDDSSSTFRLLLEVKKSFMEDPENVLADWSENNTDYCSWRGISCGLNSVLVGLNLSDSSLTGSISPSLGLLRNLLQLDLSSNRLTGPIPPALSNLSSLEFLLLFSNQLTGHIPSELGSLTSLRVLRIGDNPLTGPIPSSFGNLGSLVTLGLASSSLTGSIPSQLGRLNQLQNLILQENELTGPVPPELGNCSNLTVFTAANNGLNGTLPSELGGLENLNLFNLANNSITGEIPSELGNLSQLGYLNLMGNQLEGRIPLSLARLGNLKNLDLSFNKLLGGTPEELGNMGQLQYMVLSGNHLSGIIPRGLCSNLTSLEHLMLSDTALSGEIPSELSQCQSMKQLDLSNNSLNGSIPIELYEMTGLTDLLLNNNSFVGSISPFIGNLSNLEILALFHNNLQGSLPREIGMLAKLEILFLYDNQFSGEIPMEIGNCSSLQMIDFFGNKFGGEVPITIGRLEHLNFLHLRQNQLVGEIPATLGNCHNLTILDLADNYLSGGIPSTFGLLKDLEQLMLYNNSLEGNLPHQLINLKNLTRVNLSKNRLNGSLSALCSSRNFLSFDVTNNAFDGEIPPQLGNSHSLERLRLGKNHVSGEIPRTLGKIEELSLLDLSENSLTGPIPAEISLCKKLAHIDLNNNMLSGPIPSWLGSLPLLGELKLSFNHFSGNLPSELFTCSKLLVLSLNSNSLNGSIPDDIGNLTSLNSLNVEQNNFSGPVPPAIGKLSKLYELRMARNSFNGEIPSELGRLQNLQSMLDLSYNNLSGEIPPLLGTLAKLEELDLSHNQLTGQVPLQVGEMSSLGKLDLSYNNLEGVLDEQFSHWPPKAFEGNSRLCGSPLKHCDTDGSRNHLLGLSKTSLVIVSALSTLAAVALAILAVRMFMKNKQEFLRKGSQVNYVYSSSSSSSQAQRRPLFRYNRAVKQDIRWEDIMEATENLSDEFIIGTGGSGTIYRAEFPSGDTVAVKKISGKDDFMQNKSFVREVKTLGRIRHRHLVKLLGYCSNKNKGEGWNLLIYEFMENGSVWDWLHGKPEKTRRILDWEARFKIAVGLARGVEYLHHDCVPKIIHRDIKSSNVLLDSKMEAHLGDFGLAKELNIDNSNTESNSWFAGSFGYIAPECAYSLKATEKSDVYSMGIVLMELVSGKMPTDEAFGGDMDMVRWVEMNIEMHSQDLIDPHLMPLPPAQQFAAFQVLEVALHCTKTTPHLRPSSRQVCDLLLHVFSNRVLDFDKMNLSRHE 1257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g0056 1257 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 917 1038 - -
Alju03g0056 1257 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 192 285 - -
Alju03g0056 1257 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 286 384 - -
Alju03g0056 1257 ProSiteProfiles Protein kinase domain profile. 958 1242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju03g0056 1257 Gene3D Ribonuclease Inhibitor 180 288 IPR032675 -
Alju03g0056 1257 Pfam Protein kinase domain 963 1234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju03g0056 1257 Pfam Leucine rich repeat 294 354 IPR001611 GO:0005515
Alju03g0056 1257 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 33 191 - -
Alju03g0056 1257 ProSitePatterns Protein kinases ATP-binding region signature. 964 987 IPR017441 GO:0005524
Alju03g0056 1257 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 479 575 - -
Alju03g0056 1257 Gene3D Ribonuclease Inhibitor 369 530 IPR032675 -
Alju03g0056 1257 Gene3D Ribonuclease Inhibitor 531 868 IPR032675 -
Alju03g0056 1257 FunFam Uncharacterized protein 385 478 - -
Alju03g0056 1257 SUPERFAMILY RNI-like 577 846 - -
Alju03g0056 1257 SMART LRR_typ_2 485 509 IPR003591 -
Alju03g0056 1257 SMART LRR_typ_2 748 772 IPR003591 -
Alju03g0056 1257 SMART LRR_typ_2 821 844 IPR003591 -
Alju03g0056 1257 SMART LRR_typ_2 557 580 IPR003591 -
Alju03g0056 1257 SMART LRR_typ_2 797 819 IPR003591 -
Alju03g0056 1257 SMART LRR_typ_2 676 700 IPR003591 -
Alju03g0056 1257 SMART LRR_typ_2 100 123 IPR003591 -
Alju03g0056 1257 SMART LRR_typ_2 341 365 IPR003591 -
Alju03g0056 1257 SMART LRR_typ_2 244 268 IPR003591 -
Alju03g0056 1257 SMART LRR_typ_2 413 437 IPR003591 -
Alju03g0056 1257 SMART LRR_typ_2 292 315 IPR003591 -
Alju03g0056 1257 SMART LRR_typ_2 124 148 IPR003591 -
Alju03g0056 1257 SMART LRR_typ_2 316 340 IPR003591 -
Alju03g0056 1257 SMART LRR_typ_2 196 220 IPR003591 -
Alju03g0056 1257 Gene3D Ribonuclease Inhibitor 289 368 IPR032675 -
Alju03g0056 1257 SMART serkin_6 958 1242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju03g0056 1257 Gene3D Ribonuclease Inhibitor 36 179 IPR032675 -
Alju03g0056 1257 Gene3D Phosphorylase Kinase; domain 1 917 1038 - -
Alju03g0056 1257 SUPERFAMILY Protein kinase-like (PK-like) 944 1237 IPR011009 -
Alju03g0056 1257 Gene3D Transferase(Phosphotransferase) domain 1 1039 1240 - -
Alju03g0056 1257 SUPERFAMILY L domain-like 338 644 - -
Alju03g0056 1257 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 576 868 - -
Alju03g0056 1257 Pfam Leucine rich repeat N-terminal domain 39 73 IPR013210 -
Alju03g0056 1257 SUPERFAMILY L domain-like 39 306 - -
Alju03g0056 1257 FunFam Leucine-rich repeat receptor-like protein kinase 1039 1254 - -
Alju03g0056 1257 PRINTS Leucine-rich repeat signature 797 810 - -
Alju03g0056 1257 PRINTS Leucine-rich repeat signature 368 381 - -
Alju03g0056 1257 Pfam Leucine Rich Repeat 150 172 IPR001611 GO:0005515
Alju03g0056 1257 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 482 1237 - -
Alju03g0056 1257 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1086 1098 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g0056 Alju-ChrAlju03 1219101 1223464 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g0056 40 701 Receptor kinase-like Gene Family AT1G17750 36.771 6.72e-103 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Alju03g0056 Pkinase 1.4e-43 CL0016