Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g0028 ATGGCATTTCCTAGCCAATCAAATTTTGCCAACTCTAGCAGCTCAATGAATATGGATAGTTATGGGGCTAACAATGGAAAGAAAGATAACGATGCAAGGGAGTATCCCAATGAGCAGACGCCTTTTGATCATCAAATTTTAACTGAAGCAAGCATAGCTGAGAGAACTGCTGAATGGGGCCTTGTGATGAACTCAGGTAGTTTTAAAGCAATAGGAGGAGTGAGAACCAGTTCCTCCTTTGATGGTGAAAGAAGCAAAAATTTGTCAGATAGATTCAATGCAGCAGTATCAACAAGGACGTCTGAGGAATCAGAGTCATCATCAGGGGCATTCCCAAGGGTATCACAAGAGTTGAAGGAAGCCTTGGCATCACTACAACAGACTTTTGTTGTCTCAGATGCAACTAAACCAGACTGCCCAATAATGTATGCCAGCAGTGGATTTTTCAGTATAACAGGTTATTCTTCAAAGGAGGTCATTGGGAGGAATTGCCGGTTTCTTCAGGGTCCTGAAACAGACCAGAAAGAAGTGGCCAAAATTCGTGATGCAGTTAAACATGGGAAAAGCTATTGTGGCAGGCTTTTAAACTACAAGAAAAATGGAACCCCGTTCTGGAACCTTCTCACTGTCACTCCTATAAGAGATAGCCAGGGCAATGTCATCAAATTCATTGGAATGCAGGTTGAGGTGAGCAAATACACTGAAGGTGTGAACGAAAAGGCGTTACGGCCAAATGGATTGTCCAAGTCATTGATTCGCTATGATGCCCGTCAAAAGGAGAAAGCTTTGGGTTCCATCACAGAGGTTGTCCAAACTGTGAGGGACCCAAAATCCATCATTCAGACTGTGAGTCATGACAATGCCAGTAAGCTTGAAGAGCAAGAAAAAATCAATTCTGATTTTGTTTTGCCAAAGTCTGCTGAAATTGAGAGCAGTAGTTCAACAAAGAGGCAAACTGCTTCACTAGACTTCCAAGGTGATAAAAGCAAAAGGAAGTCAGGGCGCATATCTTTCATGAGTTTTAAAGGGAGATCTAGCTCTACAGGGAAGCATGATGAAAAGCCCATTGTTGAGCCAGAGGTTTTGATGACTAAGGACATGGAACGTACAGACAGTTGGGAGCGTGCTCAAAGAGAGAGGGATATACGACAGGGAATTGACCTAGCAACCACATTGGAGCGCATTGAAAAGAATTTTGTGATTTCTGATCCTAGACTTCCAGACAACCCAATTATATTTGCATCTGATAGCTTTCTTGAACTTACAGAATATACGCGAGAAGAAATTTTGGGAAGAAACTGTCGGTTTCTTCAAGGACCAGAAACAGATCAAGCAACTGTCTCAAAGATTAGAGATGCTATAAGAGAACAGAGGGAAATCACTGTTCAGCTTATCAACTATACCAAGAGTGGTAAGAAGTTCTGGAATTTGTTCCACTTGCAGCCTATGCGTGATCAAAATGGTGAGCTACAATACTTTATAGGCGTCCAATTAGATGGAAGTGATCATGTAGAACCTTTAAGAAACCGCCTATCTGAGAGAACAGAGCAACAAAGTGCAAAGTTGGTCAAAGCAACTGCAGAAAATGTTGATGAGGCTGTCCGAGAACTTCCTGATGCCAACTTGAGACCGGAAGATTTGTGGGCAATTCATTCTCAGCCTGTCTTCCCAAGACCTCATAAAAAGGAAAGTTCTTCTTGGTTAGCAATACAAAAGTTAACTGCAAGTGGTGAAAAAATTGGACTGCATCATTTTAAACCAATAAGGCCATTGGGTTGTGGAGATACTGGCAGCGTTCACCTTGTAGAGCTTCAAGGTGCAGGTGAACTATATGCAATGAAGGCAATGGAAAAGTCAGTCTTGCTAAATCGTAATAAGGTTCATCGAGCATGTATTGAGAGAGAGATTATATCATTGCTAGATCATCCTTTTCTTCCCACTCTATACACTTCTTTTCAGACTTCTTCACATGTATGTTTGATAACAGACTTCTGCCCTGGTGGTGAATTGTTTGCATTGTTAGATAAGCAACCCTTGAAGATTTTCAGGGAGGAATCAGCAAGATTCTATGCAGCAGAGGTTGTTATTGGTTTAGAATACCTCCACTGCTTAGGTATAATTTATCGAGACCTAAAGCCTGAAAATATTTTACTTCAGAAGGATGGCCATATTGTATTAACTGATTTCGATTTATCATTCGTGACTGCTTGTAAACCCCTGATTGTGAAGCATCCTCCACCTAGCAGAAGATCGCGAAGTCAACCACCACCAACATTTGTTGCGGAGCCTAATGCACAATCCAACTCCTTTGTTGGAACAGAAGAATACATCGCTCCTGAAATTATAACTGGAGCTGGGCATAGCAGTGCTATAGACTGGTGGGCAATTGGTATATTGTTGTATGAAATGCTCTATGGGCGCACACCATTCAGAGGAAAGAACAGACAGAAGACATTTGCCAACATCTTGCACAAAGATCTAACCTTTCCCAGCAGTATCCCGGTAAGTCTTGCAGCCAGGCAGTTGATTAATGCCCTATTGCAGAGAGACCCAGCCGCCCGTTTAGGTTCAACTACTGGAGCTAATGAAATCAAACAGCATGCTTTTTTCCGAGGAATTAGTTGGCCTTTAATCCGTTGCATGAATCCACCACCTCTAGAAGCTCCTCTGAAGTTGATAGGAAAAGACCCAATCCAAAAAGAAGTGAAATGGGAAGATGACGGTGTGCTTGTTCGCTCAATGGATTTGGATATCTTCTGA 2760 0.4207 MAFPSQSNFANSSSSMNMDSYGANNGKKDNDAREYPNEQTPFDHQILTEASIAERTAEWGLVMNSGSFKAIGGVRTSSSFDGERSKNLSDRFNAAVSTRTSEESESSSGAFPRVSQELKEALASLQQTFVVSDATKPDCPIMYASSGFFSITGYSSKEVIGRNCRFLQGPETDQKEVAKIRDAVKHGKSYCGRLLNYKKNGTPFWNLLTVTPIRDSQGNVIKFIGMQVEVSKYTEGVNEKALRPNGLSKSLIRYDARQKEKALGSITEVVQTVRDPKSIIQTVSHDNASKLEEQEKINSDFVLPKSAEIESSSSTKRQTASLDFQGDKSKRKSGRISFMSFKGRSSSTGKHDEKPIVEPEVLMTKDMERTDSWERAQRERDIRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVSKIRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQNGELQYFIGVQLDGSDHVEPLRNRLSERTEQQSAKLVKATAENVDEAVRELPDANLRPEDLWAIHSQPVFPRPHKKESSSWLAIQKLTASGEKIGLHHFKPIRPLGCGDTGSVHLVELQGAGELYAMKAMEKSVLLNRNKVHRACIEREIISLLDHPFLPTLYTSFQTSSHVCLITDFCPGGELFALLDKQPLKIFREESARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHIVLTDFDLSFVTACKPLIVKHPPPSRRSRSQPPPTFVAEPNAQSNSFVGTEEYIAPEIITGAGHSSAIDWWAIGILLYEMLYGRTPFRGKNRQKTFANILHKDLTFPSSIPVSLAARQLINALLQRDPAARLGSTTGANEIKQHAFFRGISWPLIRCMNPPPLEAPLKLIGKDPIQKEVKWEDDGVLVRSMDLDIF 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g0028 919 SUPERFAMILY PYP-like sensor domain (PAS domain) 403 499 IPR035965 -
Alju03g0028 919 SMART serkin_6 585 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju03g0028 919 Gene3D Phosphorylase Kinase; domain 1 584 668 - -
Alju03g0028 919 Pfam Protein kinase domain 587 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju03g0028 919 CDD PAS 141 230 IPR000014 -
Alju03g0028 919 ProSiteProfiles PAS repeat profile. 384 457 IPR000014 -
Alju03g0028 919 ProSiteProfiles PAS repeat profile. 114 187 IPR000014 -
Alju03g0028 919 SMART pac_2 461 503 IPR001610 -
Alju03g0028 919 SMART pac_2 191 233 IPR001610 -
Alju03g0028 919 FunFam Putative LOV domain-containing protein 669 882 - -
Alju03g0028 919 MobiDBLite consensus disorder prediction 308 328 - -
Alju03g0028 919 ProSitePatterns Serine/Threonine protein kinases active-site signature. 706 718 IPR008271 GO:0004672|GO:0006468
Alju03g0028 919 Gene3D Transferase(Phosphotransferase) domain 1 669 880 - -
Alju03g0028 919 FunFam LOV domain-containing protein 373 537 - -
Alju03g0028 919 MobiDBLite consensus disorder prediction 1 24 - -
Alju03g0028 919 Pfam PAS domain 135 231 IPR000014 -
Alju03g0028 919 Pfam PAS domain 407 499 IPR000014 -
Alju03g0028 919 SUPERFAMILY PYP-like sensor domain (PAS domain) 135 227 IPR035965 -
Alju03g0028 919 CDD PAS 407 499 IPR000014 -
Alju03g0028 919 ProSiteProfiles Protein kinase domain profile. 585 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju03g0028 919 FunFam LOV domain-containing protein 584 668 - -
Alju03g0028 919 Gene3D PAS domain 128 299 - -
Alju03g0028 919 CDD STKc_phototropin_like 583 893 - -
Alju03g0028 919 FunFam Putative LOV domain-containing protein 128 284 - -
Alju03g0028 919 ProSiteProfiles PAC domain profile. 188 242 IPR000700 -
Alju03g0028 919 NCBIfam PAS domain S-box protein 410 502 IPR000014 -
Alju03g0028 919 NCBIfam PAS domain S-box protein 140 231 IPR000014 -
Alju03g0028 919 SUPERFAMILY Protein kinase-like (PK-like) 562 892 IPR011009 -
Alju03g0028 919 MobiDBLite consensus disorder prediction 745 764 - -
Alju03g0028 919 ProSiteProfiles PAC domain profile. 458 512 IPR000700 -
Alju03g0028 919 ProSitePatterns Protein kinases ATP-binding region signature. 591 614 IPR017441 GO:0005524
Alju03g0028 919 MobiDBLite consensus disorder prediction 308 322 - -
Alju03g0028 919 Gene3D PAS domain 373 537 - -
Alju03g0028 919 SMART pas_2 386 455 IPR000014 -
Alju03g0028 919 SMART pas_2 116 185 IPR000014 -
Alju03g0028 919 MobiDBLite consensus disorder prediction 1 45 - -
Alju03g0028 919 PANTHER FLIPPASE KINASE 1-RELATED 97 887 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g0028 Alju-ChrAlju03 741223 753775 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g0028 50 918 AGC Kinase Gene Family AT5G58140 75.599 0.0 1337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Alju03g0028 Pkinase 2.1e-59 CL0016