Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g3894 ATGAGTGGGAATGAGAATTCAAAGGCCGTGGTGGTGGATCGATTGCTTGCTTCTATCAAGGAGATTTCGGGGTTACCTGAGTGTCGAAACGTTTGCAAGATGATGTATGGGAATTTAGTTCGGAGGGTGAAGTTATTGAGCCCGTTGTTTGAGGAAATTAAGGATAGTGATTGTGAGTTGCTTAGCGACGAACATATTAGATCGTTTGAATCGCTGGGGAATGCTTTGGATTCAGCTAAGAGCCTTCTCGAGTTCATGAACCAAGGGAGTAAGCTTTATCGGGCTTTGCAGAGGAATGAAACGGCAGAAAAGTTCCAACAAATAAATGACCGAATTGAAGCAGAAATTCATGTAATTCAATTTGAAAAGCTTGAGATATCAGAGGAAGTTCGAGAACAGATTGAACTTGTGCATTCTCAGTTTAAAAGAGCAAATGCTAGAACTGAATTAGCTGATTTACAACTAGATTTGGATCTAGCTGTAGCACAAAAAGAAAAAGACCCTGATCCTGAAATACTCAATAGGCTTTCTGAGAAGTTGCATCTGAAGACTGTAAATGACCTCAAGAAAGAATCGGCTGAATTACATGATTTGGTGATCACAAGTGGTGGAGAACTAGGGGACTCTATTGAGATGATGTCATCTCTTCTTAAGAGACTGAAGAACTGTGTGCTCTATGATAACCCTGAAGTTGACCCCCGTGAGGGTGAAAAAATTTCAATGAAGCACAGATCTCCTGTAATTCCAGATGATTTTAGATGTCCAATATCTCTTGAACTAATGAAAGATCCTGTAATTGTTTCTACTGGACAGACATATGAAAGATCCTGCATTCAAAAATGGCTTGATGCTGGGAACAAAACATGTCCCAAGACACAGCAAACACTTTTGCACACAGCCCTAACCCCTAACTACGCTTTGAAGAGTCTGATTGCTTTGTGGTGTGAAAACAATGGTGTTGAGCTACCAAAAAAGCAAGGGAGCTGTAAAACAAAGAAATCCGGAAGCAGTCTTTCAGATTGTGATAGAGCTGCTATTAAGGCTTTATTGGATAGACTAGCAAATGGTGACATGGAACAGCAAAGAGCTGCAGCCGGGGAGCTCCGATTGTTAGCTAAGAGGAATGCTGATAATAGAGTATGTATTGCTGAGGCAGGAGCAATACCACTTCTTGTAGAGCTGCTGTCTTCCTCAGATCCTCGAACCCAGGAGCATGCTGTCACAGCACTTCTCAATCTGTCCATCAATGAGAGTAACAAAGGAACAATTGTAAATGCAGGAGCTATACCAGACATTGTAGATGTACTGAAAAATGGCAGTATGGAGGCCAGAGAAAATGCAGCTGCAACTCTCTTTAGTTTATCGGTTCTAGATGAGAACAAGGTTGCAATAGGAGCAGCTGGGGCTATCCCTGCTTTGATTAGCTTGCTTTGTGAAGGCTCTCCTAGAGGTAAAAAAGATGCTGCTACAGCTATTTTTAACCTTTCTATCTATCAGGGAAACAAAGCTAGAGCTGTAAAGGCTGGGATAGTAGCTCCACTAATGACATTTCTTATTGATGCTGGAGGTGGGATGGTGGATGAGGCACTAGCTATACTGGCAATTCTTGCAAGCCACCCGGAAGGCAGGATGGCTATTGGTCAAGCTGATCCAATTCCTATTCTAGTTGCGGTTATACGAACTGGTTCTCCACGGAACAGGGAGAATGCTGCTGCGGTGTTGTGGTCACTTTGCATGGGAGATCTTCTGCAATTGAGACTGGCAAGGGACCATGGTGCAGAAGAAGCCCTGCGGGAATTGTCAGAAAATGGCACTGATAGAGCCAAAAGGAAAGCAGGAAGTATATTAGAACTCTTGCAAAGAATGGAGGAGGAGGATAATTTGCTCAAGTCTTAA 1896 0.4272 MSGNENSKAVVVDRLLASIKEISGLPECRNVCKMMYGNLVRRVKLLSPLFEEIKDSDCELLSDEHIRSFESLGNALDSAKSLLEFMNQGSKLYRALQRNETAEKFQQINDRIEAEIHVIQFEKLEISEEVREQIELVHSQFKRANARTELADLQLDLDLAVAQKEKDPDPEILNRLSEKLHLKTVNDLKKESAELHDLVITSGGELGDSIEMMSSLLKRLKNCVLYDNPEVDPREGEKISMKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGNKTCPKTQQTLLHTALTPNYALKSLIALWCENNGVELPKKQGSCKTKKSGSSLSDCDRAAIKALLDRLANGDMEQQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSSDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVLDENKVAIGAAGAIPALISLLCEGSPRGKKDAATAIFNLSIYQGNKARAVKAGIVAPLMTFLIDAGGGMVDEALAILAILASHPEGRMAIGQADPIPILVAVIRTGSPRNRENAAAVLWSLCMGDLLQLRLARDHGAEEALRELSENGTDRAKRKAGSILELLQRMEEEDNLLKS 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g3894 631 FunFam RING-type E3 ubiquitin transferase 245 321 - -
Alju02g3894 631 Pfam Armadillo/beta-catenin-like repeat 458 496 IPR000225 GO:0005515
Alju02g3894 631 Pfam Armadillo/beta-catenin-like repeat 375 414 IPR000225 GO:0005515
Alju02g3894 631 FunFam RING-type E3 ubiquitin transferase 345 462 - -
Alju02g3894 631 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 321 IPR013083 -
Alju02g3894 631 Pfam U-box domain 248 318 IPR003613 GO:0004842|GO:0016567
Alju02g3894 631 PANTHER U BOX DOMAIN-CONTAINING 36 620 - -
Alju02g3894 631 Gene3D - 425 521 IPR011989 -
Alju02g3894 631 ProSiteProfiles U-box domain profile. 247 321 IPR003613 GO:0004842|GO:0016567
Alju02g3894 631 CDD RING-Ubox_PUB 249 301 IPR045210 -
Alju02g3894 631 FunFam RING-type E3 ubiquitin transferase 8 122 - -
Alju02g3894 631 Coils Coil 143 163 - -
Alju02g3894 631 Gene3D - 522 629 IPR011989 -
Alju02g3894 631 SMART arm_5 498 538 IPR000225 GO:0005515
Alju02g3894 631 SMART arm_5 457 497 IPR000225 GO:0005515
Alju02g3894 631 SMART arm_5 375 415 IPR000225 GO:0005515
Alju02g3894 631 SMART arm_5 416 456 IPR000225 GO:0005515
Alju02g3894 631 SMART arm_5 539 579 IPR000225 GO:0005515
Alju02g3894 631 FunFam RING-type E3 ubiquitin transferase 463 626 - -
Alju02g3894 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 427 469 IPR000225 GO:0005515
Alju02g3894 631 Gene3D - 341 424 IPR011989 -
Alju02g3894 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 386 428 IPR000225 GO:0005515
Alju02g3894 631 SMART Ubox_2 251 314 IPR003613 GO:0004842|GO:0016567
Alju02g3894 631 SUPERFAMILY ARM repeat 345 619 IPR016024 -
Alju02g3894 631 SUPERFAMILY RING/U-box 247 323 - -
Alju02g3894 631 Gene3D - 11 123 IPR036537 GO:0007166
Alju02g3894 631 CDD MLKL_NTD 39 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g3894 Alju-ChrAlju02 58148665 58152166 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g3894 11 623 U-box Gene Family AT3G54850 66.287 0.0 791