Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g3888 ATGATTCCCATTAGCTGCTGCGCCATTCTCTCTGTTTGGCTCCTCACCTTCCCTTTCTCTCCGCCGACCATCAAAGCTGCCTTCAACCCTGAACATGTGGTTATGGATGTTCAAAGGAGAATCAACGCGTCTCTCTCCAGAAGACAACTCCTCCCCGTCGACAAATTCGACCAAGCTCCAGGCTGCCTCACGGGCAATCCCATCGACGACTGCTGGCGGTGCGACCCCAACTGGGCCGCCGACCGCCAGAAGCTAGCCGACTGTGGTATTGGGTTCGGCACCGACGCGGCGGGCGGCAAGGGCGGCCAGTTCTACATCGTCACCGACCCTTCCGATAACGACCCGGTGAACCCAGCTCCGGGAACTCTTAGGCACGCCGTAATCCAAGACGTGCCCCTATGGATCGTCTTCGCAGGCAACATGATGATCACCCTGAAGCACGAGCTGATGTTCAACAGCTTCAAGACGATCGACGGACGTGGCGCCAGCGTGCACATCACCGGCAACGGCTGCATCACGCTGCAGTACGTGACGAACATCATCATTCACAACGTGCACATCCACCACTGCAGGCCGTCAAGCAAAACGATGATACGGGCGAGTCCAACAAAGGTGGGATTGAGAGGGGGATCGGACGGCGACGGGGTGTCGATCTATGGGTCACAGAAGATCTGGATAGACCATTGCATGGTGGCGTATTGCACGGACGGACTAATAGACGCGATAATGGGGTCGACGGGGATAACGATATCGAACAACCATTTCTCTCATCACGACAAGGTGATGCTGCTGGGGCATGATGATAGGTATGTAGGGGATAGGAGAATGCAGGTGACAGTGGCATTCAATCACTTCGGGGAGAAGCTGGTGCAGCGGATGCCACGTTGCAGACACGGATACGTACACGTGGTGAACAACGATTACACGCAGTGGGAGATGTACGCCATCGGAGGCAGTGCGGCGCCCTCCATAAACAGCCAGGGTAACCGCTACACTGCTCCGCCCAATGCTAATGCCAAGGAGGTGACCAAGAGGGTAGGCACAGATGAGAGAGAGTGGGCCAGTTGGAATTGGAAGACGGAAGGGGACTTAATGGTGAACGGAGCGTACTTCGTGGCATCGGGAGATTGGGTGAGCACCCAATACGAGCGGGACTCATCTCTGCCGCCCCAATCCGCCCTTCACATCGACCTCCTCACCCTCAACGCCGGCGTCTTCAACGATCCCAGGGAATTTGGGGATGTATATCCCAGCGTCTTCATGGAGAACGGCGGAGATGGAGTGATGCCCATGCCCAGGCATGGCACCTCCATTAGTAATGCTTCGCCGCCCTCTCCATTCTTTTCACTTCTCCTCTTCTGCACTGTTGCTTCTACTATTTGTTCTATTTCGCCAACACTATTATCATCCTTCTGCCCAATATTGTTAGTTTAA 1434 0.553 MIPISCCAILSVWLLTFPFSPPTIKAAFNPEHVVMDVQRRINASLSRRQLLPVDKFDQAPGCLTGNPIDDCWRCDPNWAADRQKLADCGIGFGTDAAGGKGGQFYIVTDPSDNDPVNPAPGTLRHAVIQDVPLWIVFAGNMMITLKHELMFNSFKTIDGRGASVHITGNGCITLQYVTNIIIHNVHIHHCRPSSKTMIRASPTKVGLRGGSDGDGVSIYGSQKIWIDHCMVAYCTDGLIDAIMGSTGITISNNHFSHHDKVMLLGHDDRYVGDRRMQVTVAFNHFGEKLVQRMPRCRHGYVHVVNNDYTQWEMYAIGGSAAPSINSQGNRYTAPPNANAKEVTKRVGTDEREWASWNWKTEGDLMVNGAYFVASGDWVSTQYERDSSLPPQSALHIDLLTLNAGVFNDPREFGDVYPSVFMENGGDGVMPMPRHGTSISNASPPSPFFSLLLFCTVASTICSISPTLLSSFCPILLV 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g3888 477 SUPERFAMILY Pectin lyase-like 66 405 IPR011050 -
Alju02g3888 477 FunFam Pectate lyase 65 407 - -
Alju02g3888 477 Gene3D - 65 407 IPR012334 -
Alju02g3888 477 PANTHER PECTATE LYASE 18-RELATED 29 407 IPR045032 GO:0030570
Alju02g3888 477 Pfam Pectate lyase 147 329 IPR002022 -
Alju02g3888 477 SMART amb_all 140 337 IPR002022 -
Alju02g3888 477 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Alju02g3888 477 PRINTS Pollen allergen Amb family signature 88 105 IPR018082 -
Alju02g3888 477 PRINTS Pollen allergen Amb family signature 356 380 IPR018082 -
Alju02g3888 477 PRINTS Pollen allergen Amb family signature 148 164 IPR018082 -
Alju02g3888 477 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Alju02g3888 477 PRINTS Pollen allergen Amb family signature 385 408 IPR018082 -
Alju02g3888 477 PRINTS Pollen allergen Amb family signature 212 233 IPR018082 -
Alju02g3888 477 PRINTS Pollen allergen Amb family signature 112 137 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g3888 Alju-ChrAlju02 58108575 58111620 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g3888 1 406 Polysaccharide Lyase AT3G53190 63.971 0.0 520