Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g3877 ATGACAGATTTTCAAGCGCTACAACAGAAGCCTGAATCCACTGATGCCCATGCTGAGTTTGAACGTGGGCTGGAGGACTTTATGCGGGACCACTTGGATGATTGCATGTCCTTTGCTTCATGTAGTTCTGCCCGAACTCAGGGTGGGGACGATGATGAGGGTGATCAGCTAGTTAGAAGGAGAAGAAGATCTGATCTTGAGGATGATGATTTAGCAGAGTCATCAGCTGTACGCCGGCGCCACTCACGGATTTTGAGCAGATGGGCTGCCCACCAGGCCCAAGAAATGATAACTACAATTGAGAGGAGGAACCGGGAGTCTGAGTTGATGGCACTTGCAGGACTACACACAGTCTCAATGTTGGACTCCTCTTTTTTGAGGGGATCACAGACTCCAACTTCTGGCCAGGAGGGGGCTGTAGAGAGGCCCAGCACTCAGGCTTCTGCTATTCTTCAGATGTGGCGTGAATTGGAGGATGAACACTTACTTAATAGGGCACGTGAAAGAATGAGGGAAAGGTTGCGTCAACAAAGGATTGCTGACTCTAATGCCAATGGATCAAGTACCATGTCAGATAGTCGGGGAAGTGAGAATCAGGGGAGTTTGGTGGATGCTAGTGAAAGTGAAAATGATTATGGGACTTGGTCACATGATCAGATTCCATCACCGCATGAAAATAGTGACCATAATGGGTCTAGCCGGGAGCAATCTCCTGACCTTGGTGAAGTTGAGAGGGAGAGAGTTAGACAGATTGTGCGGGGATGGATGGAAAGTGGCATCAGTGATCATTCATCTAATGCAAGTCAGAGAAACAATAATCACAGAGCAGAGTGGCTTGGTGAAACAGAGCGTGGAAGAGTAAGAATTGTCAGGGAGTGGGTGCAAATGACAAGTCAGCAGCGAGGTTCTCGTGGGAGCCGGAGGGATAGCCAAGTCAATGAAAGTGGTTCTCGAGTTGAGAGAGTCCGCGATGGACTGTTAACTGATCATGATGAGAGCCAGCCAGAGCATGTACGCAGAGATTTGTTGAGGTTGCGTGGAAGACAAGCTCTGGTTGATTTGCTTGTGAGGGTTGAAAGGGAAAGACAGAGAGAGCTGCAGGGTTTGTTGGAGCACCGTGCTGTTTCTGATTTTGCTCATCGTAACCGAATTCAGTCATTACTCAGAGGTAGATTCCTCCGAAATGAAAGAACTATAGAAGATGAGAGGCCTCCATCTGTGGCTGCAAATGAATTAGTTCAGTTAAGACAACGTCACACAGTCTCTGGTTTAAGAGAAGGGTTTCGCTCAAGATTAGAAAATATTGTTCGTGGTCAAGCTAGCAGCAATTCTGATGCCACATCTAATAGTAATATCAGTGAAACTAGAAGTGACGTGAACCAAGAAAACAATTCAATAGATGCCCAGCATGAAAGTTATCAACAAAGGCAGATTAGGAGCCTTGAAACTGATGTGCAGCAGTTGGCTGATCAAACAGGAACTTTTGAAAGTAGCACTAGTGAGAGTATAAGTTGGCAAGAAACTAGTAATCAAGGAGGGAACTGGCAGGAACAAGTTACTGAAGATGGTCGTGGAAATTGGCAACAGAGAGCTTATGGTCCATTGAATCAGTTAAGAGATGGAAGAGCTGTTAATGATTGGCGGCAGGATTCTCCAACAAACGTAGAAGGGGAAGATACACATCCACGAGAAGCTCAGGGAATTTGGCATGAGGCTAATTCAAGGGAAGCTGCTGGTAATTGGTCAGAAGAACCTTCTGGTCCTCCAAGGAATCGACGTGGTGTTCCTTTTAGGAGATTCAATAGATTTCATCCACCTGACGATGACAATGTATATAGCATGGAGCTTAGAGAACTTTTGAGCAGGAGAAGTGTTTCCAATCTTCTTCGCAGTGGTTTCCGTGAAAGTCTGGACCAATTAATCCAGTCATATGTGGAAAGGCAAAATCGTGCACCTATTGACTGGGATTTGCACAGAAACTTGCCAACGCCAACTCCTGCCTCACCTGATAGGGATCCTGAACAACAGGCGGATGAACGTAATGGGGTTCAACATGATGCCATTAATAGGCCTTCTCTAGTGTTGCCATCTCCTCCAGTTCCTCCACCTCAACCACTTTGGCACCAGGACTTGCATCAGACTGGATGGTCTCGCCATAGCATGCATCGATCTGAAATTGAATGGGAGATAATCAATGATTTGAGATCAGACATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGCGGATGTTGGAGGCTTGCATGGATATGCAACTGGAGTTACAGCGCTCTGTCAGGCAGGAAGTGTCTGCAGCGCTGAATCGTTCAGCGGGTGAAAGTGGAATGGGGGTCGAGACATCTGAGGATGGCTCTAAATGGGGTCATGTGAAAAAAGGAACTTGTTGTGTTTGTTGTGATAGCCATATTGATTCGCTCTTGTACAGATGTGGTCACATGTGCACTTGTTCAAAATGTGCCAATGAATTAGTTCGTGGAGGAGGAAAGTGCCCTTTATGCCGAGCACCTATTGTGGAGGTGATCCGAGCATATTCCATTGTGTAA 2565 0.4647 MTDFQALQQKPESTDAHAEFERGLEDFMRDHLDDCMSFASCSSARTQGGDDDEGDQLVRRRRRSDLEDDDLAESSAVRRRHSRILSRWAAHQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQTPTSGQEGAVERPSTQASAILQMWRELEDEHLLNRARERMRERLRQQRIADSNANGSSTMSDSRGSENQGSLVDASESENDYGTWSHDQIPSPHENSDHNGSSREQSPDLGEVERERVRQIVRGWMESGISDHSSNASQRNNNHRAEWLGETERGRVRIVREWVQMTSQQRGSRGSRRDSQVNESGSRVERVRDGLLTDHDESQPEHVRRDLLRLRGRQALVDLLVRVERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERTIEDERPPSVAANELVQLRQRHTVSGLREGFRSRLENIVRGQASSNSDATSNSNISETRSDVNQENNSIDAQHESYQQRQIRSLETDVQQLADQTGTFESSTSESISWQETSNQGGNWQEQVTEDGRGNWQQRAYGPLNQLRDGRAVNDWRQDSPTNVEGEDTHPREAQGIWHEANSREAAGNWSEEPSGPPRNRRGVPFRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQNRAPIDWDLHRNLPTPTPASPDRDPEQQADERNGVQHDAINRPSLVLPSPPVPPPQPLWHQDLHQTGWSRHSMHRSEIEWEIINDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGESGMGVETSEDGSKWGHVKKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYSIV 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g3877 854 MobiDBLite consensus disorder prediction 258 279 - -
Alju02g3877 854 ProSiteProfiles Zinc finger RING-type profile. 802 841 IPR001841 -
Alju02g3877 854 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 110 853 - -
Alju02g3877 854 MobiDBLite consensus disorder prediction 655 681 - -
Alju02g3877 854 MobiDBLite consensus disorder prediction 307 335 - -
Alju02g3877 854 MobiDBLite consensus disorder prediction 485 522 - -
Alju02g3877 854 MobiDBLite consensus disorder prediction 125 146 - -
Alju02g3877 854 MobiDBLite consensus disorder prediction 179 221 - -
Alju02g3877 854 MobiDBLite consensus disorder prediction 295 335 - -
Alju02g3877 854 MobiDBLite consensus disorder prediction 176 244 - -
Alju02g3877 854 MobiDBLite consensus disorder prediction 48 70 - -
Alju02g3877 854 Coils Coil 731 751 - -
Alju02g3877 854 CDD mRING-HC-C3HC5_NEU1 799 851 - -
Alju02g3877 854 MobiDBLite consensus disorder prediction 435 464 - -
Alju02g3877 854 MobiDBLite consensus disorder prediction 259 275 - -
Alju02g3877 854 MobiDBLite consensus disorder prediction 41 70 - -
Alju02g3877 854 MobiDBLite consensus disorder prediction 535 597 - -
Alju02g3877 854 Pfam Zinc finger, C3HC4 type (RING finger) 799 846 - -
Alju02g3877 854 SUPERFAMILY RING/U-box 801 847 - -
Alju02g3877 854 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 789 852 IPR013083 -
Alju02g3877 854 MobiDBLite consensus disorder prediction 552 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g3877 Alju-ChrAlju02 57921627 57926716 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g3877 766 848 C3H Transcription Factor Family AT3G06140 31.325 6.75e-07 50.4