Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g3858 ATGGCGGGAAGCGTAAATCTTTTCATCTTTTTCTTGTCTGTGTTGCTGGCACATTATAGTGCAGAAGCCTGGGTGGGGGTGAACTGGCAGGATATCCATCCCAGCAATCGTCTTTTCTTCGAGGAACGTGAAGCTGCTTTTGGCCCGAGAGCCAGCAGTTCTGGAGAACTGGGGATTTTGCATTTGGCGGAGCCACTTGATGCTTGTGAAGCACTGCCAAATAATAAGGCTGCCCAAATCTCAAAAGTGGGAAACCCTTTCGTTTTGATCGTTAGAGGGCAATGTAGCTTTGTGGAGAAGGTCATTAGAGCACAAGACGCTGGCTTCAAAGCTGCAATTATCTACGATAATAATGATGATGGTTTCTTAATTAAAAGTGCTATAAATATACCTTCTATATTCGTAACAAAAGTTGCAGGCGAATTACTGAGGGAATATGTTGGATCAGAGATTTGGATAATGGCAGGTTTTGGATATTCAGAAACAGTGTCTATGCTGGTATGTAGGGTGGTGGTTTTAATGACCCTATTCATCGGATCGTATGTTTTATATGGTGTGTGGAGGGTGTTTGGAGGAGGATATCTTACAAGTTCAGGCTTGGGAATGAGTAGGCATTTAGTGAATGAAATCCCAAGTTTAATATTCAGCTCCTCTCTTGTAGAGGATAATTCCACTTCAACAACATGTGCCATATGCTATGATGATTATAGCTTAGGAGACAAGCTCAGGATTCTGCCCTGCCTTCACAAGTTTCATGCTAGCTGTGTGGATAAATGGCTTACTTTACGCAAAAGCTTCTGTCCTGTTTGTAAGCGTCATGCTTTAACTGGATTGCCTCAAACACCACCACCTTCAGAATCCACACCTTTGCTTTCTGCTCAATCTTCATCTCCTTCTGTTCACTCCTCCATAGACATAGACATCTCCCCAACATTATCTGTACCTTCTCATTTAATTTGA 960 0.425 MAGSVNLFIFFLSVLLAHYSAEAWVGVNWQDIHPSNRLFFEEREAAFGPRASSSGELGILHLAEPLDACEALPNNKAAQISKVGNPFVLIVRGQCSFVEKVIRAQDAGFKAAIIYDNNDDGFLIKSAINIPSIFVTKVAGELLREYVGSEIWIMAGFGYSETVSMLVCRVVVLMTLFIGSYVLYGVWRVFGGGYLTSSGLGMSRHLVNEIPSLIFSSSLVEDNSTSTTCAICYDDYSLGDKLRILPCLHKFHASCVDKWLTLRKSFCPVCKRHALTGLPQTPPPSESTPLLSAQSSSPSVHSSIDIDISPTLSVPSHLI 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g3858 319 MobiDBLite consensus disorder prediction 278 304 - -
Alju02g3858 319 SUPERFAMILY PA domain 84 145 IPR046450 -
Alju02g3858 319 Gene3D - 30 162 - -
Alju02g3858 319 MobiDBLite consensus disorder prediction 287 304 - -
Alju02g3858 319 CDD PA_C_RZF_like 40 154 IPR044744 -
Alju02g3858 319 ProSiteProfiles Zinc finger RING-type profile. 229 271 IPR001841 -
Alju02g3858 319 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 200 281 - -
Alju02g3858 319 Pfam Ring finger domain 228 271 IPR001841 -
Alju02g3858 319 Pfam PA domain 67 143 IPR003137 -
Alju02g3858 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 275 IPR013083 -
Alju02g3858 319 SUPERFAMILY RING/U-box 201 285 - -
Alju02g3858 319 SMART ring_2 229 270 IPR001841 -
Alju02g3858 319 FunFam Putative RING zinc finger domain superfamily protein 199 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g3858 Alju-ChrAlju02 57787672 57789375 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g3858 40 310 C3H Transcription Factor Family AT1G22670 41.637 6.27e-57 188