Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g3854 ATGCTTTCTTGGGGGTGCTTCTCCACAATGGAATTCGGCGGCTTCTCATCCAGTGAATGGAACCGTCAAATCGATGCCGATCCCAACCATAATAATAGTAAACGCCATTGCCATTTCTTGGCTAATAATAAGCCAAAATGCGAACTACTGATTCCTGATCTCATCGCCACAAAAGAGGGAGAGAAAAACAAGGCAAGGTCAGGAAAATCACCAATTCCACCATCGTTGAACACGGAGATGGAGAAGAAACCTTCTTCAACAAAAACCATGTCGGTCTTGCCTCACGAAACCCCGAGGCTCAGAGACCATTATCTTGTGGGGAAGAAGCTAGGGCAAGGCCAATTTGGGACCACCTACCTCTGTACGCACAAGGTATCAGGCGAACAATTCGCTTGCAAATCGATTCCCAAGCGGAAGCTCTTGTGCAAGGACGATTACGATGACGTGTGGAGAGAGATTCAGATCATGCATCATCTGTCGGAGCACTCCCATGTGGTTCGGATACAAGGGACGTACGAGGACGCTGTGTTTGTGCACCTGGTTATGGAGCTGTGTGGTGGGGGTGAGCTGTTTGATAGGATTATTCAGAAGGGGCATTACAGTGAGAAAGAGGCGGTCAAGTTGATAAAGACCATAGTTGGTGTGGTCGAAGCTTGTCACTCTCTTGGGGTAATGCATAGGGATCTCAAGCCTGAGAATTTCTTGTTTGATAGTCCTAGTGACGACGCTCAGATGAAGGCTACGGATTTTGGCCTCTCTGTCTTTTACATGCCAGGACAAATCTTTTCCGAGGTAGTTGGAAGCCCCTACTATGTTGCTCCTGAGATTTTGCGCAAGAGTTATGGACCAGAAGCAGATGTATGGAGTGCTGGAGTTATCCTTTACATCTTGCTGAGTGGGGTCCCACCTTTTTGGGCCGAAACTGAAGCGGGCATTTTCAGACACATTTTACAAGGAAAGCCAGATTATGAATCTGACCCATGGCCAAGCATATCAGAAAGTGCAAAAGATTTGGTGATCAAAATGCTAGAGAAGGACCCAAAGAAAAGAATTTCTGCCCATGAAGTCTTGTGTCACCCTTGGATAAATGATGATAATGTTGCCCCTGACAGACCTCTGGATTCCGCAGTTTTGTCCCGTCTGAAACAGTTCTCAGCAATGAATAAATTGAAGAAGATGGCTTTACGGGTGATAGCAGAAAGACTTTCAGAGGAAGAAATCGGTGGCTTAAAAGAGTTGTTCAAGATGATTGACACAGACAACAGTGGGACTATAACATTTGAGGAACTCAAAGAAGGTCTTAAAAAAGTTGGTTCTGATCTGATGGAATCCGAAATTAAATCCCTAATGGACGCGGCTGACATAGACCAAAGTGGATCAATTGACTATGGTGAATTTCTTGCTGCCACACTACACATGAATAAGATGGAAAGAGAGGAAAATTTAGTCACAGCATTTTCCTATTTTGACAAAGATGGTAGTGGATACATCACCATTGATGAGCTAGAACAAGCTTGTAAAGAGTTTGGCTTAGGTGACGTGAATCTAGATGTTATGTCAGAAATTGATCTAGATAATGATGGGAGAATTGATTATGGGGAGTTTGTAGCAATGATGAAGCAGGGAGATGGAGGGGCTGGCCGCAGCAGAACCACAAGAGGCAATTTGAACTTCAATATAGCAGACGCCTTCCAACAAGGAAATGACTCATCCTGA 1716 0.447 MLSWGCFSTMEFGGFSSSEWNRQIDADPNHNNSKRHCHFLANNKPKCELLIPDLIATKEGEKNKARSGKSPIPPSLNTEMEKKPSSTKTMSVLPHETPRLRDHYLVGKKLGQGQFGTTYLCTHKVSGEQFACKSIPKRKLLCKDDYDDVWREIQIMHHLSEHSHVVRIQGTYEDAVFVHLVMELCGGGELFDRIIQKGHYSEKEAVKLIKTIVGVVEACHSLGVMHRDLKPENFLFDSPSDDAQMKATDFGLSVFYMPGQIFSEVVGSPYYVAPEILRKSYGPEADVWSAGVILYILLSGVPPFWAETEAGIFRHILQGKPDYESDPWPSISESAKDLVIKMLEKDPKKRISAHEVLCHPWINDDNVAPDRPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGTITFEELKEGLKKVGSDLMESEIKSLMDAADIDQSGSIDYGEFLAATLHMNKMEREENLVTAFSYFDKDGSGYITIDELEQACKEFGLGDVNLDVMSEIDLDNDGRIDYGEFVAMMKQGDGGAGRSRTTRGNLNFNIADAFQQGNDSS 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g3854 571 ProSitePatterns EF-hand calcium-binding domain. 523 535 IPR018247 -
Alju02g3854 571 FunFam Calcium-dependent protein kinase SK5 190 374 - -
Alju02g3854 571 Gene3D Phosphorylase Kinase; domain 1 105 189 - -
Alju02g3854 571 SUPERFAMILY Protein kinase-like (PK-like) 92 383 IPR011009 -
Alju02g3854 571 CDD STKc_CAMK 103 361 - -
Alju02g3854 571 Pfam Protein kinase domain 106 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju02g3854 571 Gene3D - 373 542 - -
Alju02g3854 571 Pfam EF-hand domain pair 480 540 IPR002048 GO:0005509
Alju02g3854 571 Pfam EF-hand domain pair 410 470 IPR002048 GO:0005509
Alju02g3854 571 ProSitePatterns EF-hand calcium-binding domain. 418 430 IPR018247 -
Alju02g3854 571 SUPERFAMILY EF-hand 390 541 IPR011992 -
Alju02g3854 571 SMART efh_1 445 473 IPR002048 GO:0005509
Alju02g3854 571 SMART efh_1 481 509 IPR002048 GO:0005509
Alju02g3854 571 SMART efh_1 409 437 IPR002048 GO:0005509
Alju02g3854 571 SMART efh_1 514 542 IPR002048 GO:0005509
Alju02g3854 571 FunFam Calcium-dependent protein kinase 1 370 543 - -
Alju02g3854 571 CDD EFh 410 469 IPR002048 GO:0005509
Alju02g3854 571 PANTHER SERINE/THREONINE-PROTEIN KINASE 95 535 - -
Alju02g3854 571 MobiDBLite consensus disorder prediction 70 91 - -
Alju02g3854 571 FunFam Calcium-dependent protein kinase 1 106 189 - -
Alju02g3854 571 CDD EFh 485 540 IPR002048 GO:0005509
Alju02g3854 571 ProSiteProfiles EF-hand calcium-binding domain profile. 517 545 IPR002048 GO:0005509
Alju02g3854 571 MobiDBLite consensus disorder prediction 58 91 - -
Alju02g3854 571 ProSiteProfiles Protein kinase domain profile. 104 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju02g3854 571 ProSitePatterns Protein kinases ATP-binding region signature. 110 133 IPR017441 GO:0005524
Alju02g3854 571 ProSitePatterns EF-hand calcium-binding domain. 454 466 IPR018247 -
Alju02g3854 571 SMART serkin_6 104 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju02g3854 571 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Alju02g3854 571 ProSiteProfiles EF-hand calcium-binding domain profile. 405 440 IPR002048 GO:0005509
Alju02g3854 571 Gene3D Transferase(Phosphotransferase) domain 1 190 372 - -
Alju02g3854 571 ProSiteProfiles EF-hand calcium-binding domain profile. 477 512 IPR002048 GO:0005509
Alju02g3854 571 ProSitePatterns EF-hand calcium-binding domain. 490 502 IPR018247 -
Alju02g3854 571 ProSiteProfiles EF-hand calcium-binding domain profile. 441 476 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g3854 Alju-ChrAlju02 57729980 57733496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g3854 80 571 EF-hand Containing Proteins AT4G09570 80.325 0.0 827
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Alju02g3854 Pkinase 5.7e-73 CL0016